Motif analysis of Glycyrrhiza uralensis

Combining text-mining technology with data sources from plantCARE, PLACE, AthMap etc. We collected 930 motifs with published annotations. With these identified motifs and published annotations, we predicted TF/TR-binding regions. In addition to scanning for motif sequences, we offer a Z–score method that calculates the significance enrichment of motifs.

1.Sequence Scan

Please input a fasta sequence, we'll find out all the possible motifs.

  Example

   

2.Name Scan

Please input a list of Glycyrrhiza uralensis gene names, and we'll compute the significant motifs located at 3000bp upstream of the gene, then show each motif and its frequency, users can also significantly analyze these motifs, and a job ID will generate.

  Example

Input your Email ID please (required)



   


Or submit your previous job ID



   


3.Custom motif Scan

Please input a list of Glycyrrhiza uralensis gene names and the motif sequences you interested, we'll extract all these genes promoter sequence (3000bp upstream), then show each motif's frequency and significant analysis result.

  Example

Please input motifs splited by ":"



   


Or submit your previous job ID



   

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved