Gene detail information of Glyur000001s00000014.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37850.1 | 4.00E-36 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003549987.1 | 4.42E-142 | PREDICTED: transcription factor bHLH18-like [Glycine max] |
| Swissprot | tr|Q9T072|BH025_ARATH | 6.00E-55 | Transcription factor bHLH25 |
| trEMBL | tr|I1MVF8|I1MVF8_SOYBN | 2.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G16720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 78593 | 80756 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000014.1 | PF00010.21 | HLH | 198 | 242 | 3.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.778 |
| SRR1783600 | control | 3.812 |
| SRR1783602 | moderate drought stress | 7.113 |
| SRR1811619 | moderate drought stress | 7.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.171 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 34.566 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.022 |
| SRR2967015 | Control (Tissue:root) | 19.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.676 |
| SRR9715740 | Leave | 0.037 |
| SRR9715741 | Leave | 0.554 |
| SRR9715739 | Root | 9.548 |
| SRR9715742 | Root | 14.280 |
| SRR9715743 | Root | 13.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.067 |
| SRR8749029 | MeJA induced 9h | 0.106 |
| SRR8749030 | Uninduced | 0.037 |
| SRR8749031 | Uninduced | 0.022 |
| SRR8749032 | Uninduced | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.363 |
| SRR8400027 | Control-Root | 21.891 |