Gene detail information of Glyur000001s00000016.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37850.1 | 8.00E-48 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003525884.2 | 1.06E-135 | PREDICTED: transcription factor bHLH18-like [Glycine max] |
| Swissprot | tr|Q9T072|BH025_ARATH | 1.00E-55 | Transcription factor bHLH25 |
| trEMBL | tr|K7KPK5|K7KPK5_SOYBN | 4.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G23291.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 94016 | 103349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000016.1 | PF00010.21 | HLH | 158 | 202 | 1.20E-08 |
| Glyur000001s00000016.1 | PF00010.21 | HLH | 530 | 577 | 1.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.068 |
| SRR1783600 | control | 0.052 |
| SRR1783602 | moderate drought stress | 0.099 |
| SRR1811619 | moderate drought stress | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.378 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.456 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.514 |
| SRR2967015 | Control (Tissue:root) | 9.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.705 |
| SRR9715740 | Leave | 4.942 |
| SRR9715741 | Leave | 25.389 |
| SRR9715739 | Root | 0.762 |
| SRR9715742 | Root | 12.130 |
| SRR9715743 | Root | 8.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.383 |
| SRR8749028 | MeJA induced 9h | 0.063 |
| SRR8749029 | MeJA induced 9h | 0.144 |
| SRR8749030 | Uninduced | 0.510 |
| SRR8749031 | Uninduced | 0.440 |
| SRR8749032 | Uninduced | 1.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.775 |
| SRR8400027 | Control-Root | 5.587 |