Gene detail

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Gene detail information of Glyur000001s00000018.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37840.1	8.00E-146	hexokinase-like 3
NR	XP_004509202.1	0	PREDICTED: probable hexokinase-like 2 protein-like [Cicer arietinum]
COG	YP_007945726.1	2.00E-24	hexokinase [Desulfotomaculum gibsoniae DSM 7213]
Swissprot	tr\|Q9T071\|HXKL2_ARATH	0	Probable hexokinase-like 2 protein
trEMBL	tr\|I1MVG1\|I1MVG1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G16750.1}

Sequence

Transcript Sequence

>Glyur000001s00000018.1
ATGAGGAAGGAGGTGGTGGTGGTGGTTGTGAGCACAACTGTTGCGGTGGTAGTAGTGGGGGCCTTGGTGAGGAAATGGAAGCGGAGGAAAGAGCAACAGTTGAGGCAAACGAGGAACATCATTCGGAAATTCGCAAGGGAATGTGCCACACCAGTAACAAAGCTTTGGCAGGTTGCNGATGACTTGGTGTCTCACATGAAAGCCTCTCTTGCTGAAACCTCCACTGACCTCAACATGGTCATTTCCAACGTTACATCCCTCCCTCATGGAGAAGAGGAAGGTCTTTTTTATGGGGTGAATTTGCAAGGCACGAACTTGTTGATGTTGTGCGCGCGGCTTGGGGGAAAGAACATGCCTATCTCTGGTTTACACAGGGAAGAGATTTCCATCCCCGCTGTTGTCTTGGCTGGTACTTCCCAGGAGAAAACTGATTTCGTAGCTACGGAGATAGCAAAGTTCGTTTCGGCGCATCCAGAATATGATCAGGAGGGTGGAGCCGCCAAGAAGAAGAAATTGGGCTTCACATTGGCAAATCCAATAGACAAANCTCTACCTTTCACGAGTACCACATTTCAACGGAAAAGCGCGGACGACCCAGTTCGCAAAGGATTGGTGAAAGACCTTAATCGAGCGTTGAAGAATCATGGAATGAAAATGCGTGTATTTGCACTGGTTGATGAGACCATCGGGGGTTTGGCCGGAGGAAGATACTACAACAGGGACAGCGTGGCTGCAGTTACCCTTGGCATGAGCACAAATGCTGCTTATGTAGAACCAACACAGGAAGTTGCAAGTGAGCTTGCTCAATCTCCCAATTCAAACGAGCTGGTAATTAGCATGGAGTGGGGAAACTTCAAATCCCCTCATTTTCCTCTCACACCATTTGACGCTAGTTTACATGCTGAAAGCTCAAATCCTGGTAGCGGGATTTTCGAAAAGCTGATNTCAGGGATGTATTTGGGAGAAATTGTGAGACGGGTCTTGTTGAAGATGGCCCAAGAAACAGCTCTATTTGGAGGCAGCGTGCCTGCAAAATTGATGACTCCATACATGCTAAGGTCTCCTGATATGGCTGCTATGCATCAAGATACATCAGAGGATCGTGAGGTAGTCGCTGAGAAACTCAAAGAGGTTTTTGGGGTCAGTAGTAGCACTCCGATGGCACGCGAGGTGGTTGCTGAGGTGTGTGACATAGTAACAGAGCGTGGTGCTCGCTTAGCTGGGGCTGGAATTGTGGCCATAATCAAGAAGCTTGGGAGAATTGAGAACAGAAAAAGTGTGGTGATCGTGGAAGGTGGGCTTTATGAGCACTACCGCATTTTCAGAAATTACCTTCATAGCAGTGTCTGGGAAATGCTTGGCAACGATCTTTCAGACAATGTCATTGTAGAACATTCTCATGGTGGCTCTGGAACCGGAGCTCTATTCCTTGCTGCTGCTCAGACTCACACACAACGTGCAGAATCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	110574	113584	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00844	HK	EC:2.7.1.1	Carbon metabolism	map01200
			Glycolysis / Gluconeogenesis	map00010
			Fructose and mannose metabolism	map00051
			Galactose metabolism	map00052
			Starch and sucrose metabolism	map00500
			Amino sugar and nucleotide sugar metabolism	map00520
			Streptomycin biosynthesis	map00521
			Neomycin, kanamycin and gentamicin biosynthesis	map00524
			HIF-1 signaling pathway	map04066
			Insulin signaling pathway	map04910
			Carbohydrate digestion and absorption	map04973
			Central carbon metabolism in cancer	map05230
			Type II diabetes mellitus	map04930

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0005524 ATP binding GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000018.1	PF00349.16	Hexokinase_1	39	237	6.60E-21
Glyur000001s00000018.1	PF03727.11	Hexokinase_2	247	480	1.10E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.244
SRR1783600	control	1.146
SRR1783602	moderate drought stress	1.242
SRR1811619	moderate drought stress	1.139

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.838
DRR006520	Root Summer glycyrrhizin high producing strain	3.582
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.095
DRR006524	Root Summer glycyrrhizin low producing strain	2.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.225
SRR2868004	Drought Stress(Tissue:root)	0.393
SRR2967015	Control (Tissue:root)	0.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	1.578
SRR9715742	Root	1.981
SRR9715743	Root	2.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.641
SRR8400027	Control-Root	9.133