Gene detail information of Glyur000001s00000026.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65730.1 | 3.00E-97 | xyloglucan endotransglucosylase/hydrolase 6 |
| NR | XP_003539234.1 | 6.90E-134 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 6-like [Glycine max] |
| COG | YP_004104634.1 | 9.00E-09 | glycoside hydrolase family protein [Ruminococcus albus 7] |
| Swissprot | tr|Q8LF99|XTH6_ARATH | 7.00E-122 | Probable xyloglucan endotransglucosylase/hydrolase protein 6 (Precursor) |
| trEMBL | tr|I1LH32|I1LH32_SOYBN | 3.00E-134 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 165772 | 168010 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000026.1 | PF00722.16 | Glyco_hydro_16 | 4 | 118 | 1.10E-39 |
| Glyur000001s00000026.1 | PF06955.7 | XET_C | 141 | 191 | 1.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.065 |
| SRR1783600 | control | 0.063 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.176 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.865 |
| SRR2967015 | Control (Tissue:root) | 0.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.974 |
| SRR9715740 | Leave | 77.490 |
| SRR9715741 | Leave | 59.239 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.146 |
| SRR9715743 | Root | 0.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.040 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.074 |
| SRR8400027 | Control-Root | 0.043 |