Gene detail information of Glyur000001s00000030.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65790.1 | 3.00E-65 | myb domain protein 68 |
| NR | KHN13020.1 | 7.91E-105 | Transcription factor RAX3 [Glycine soja] |
| Swissprot | tr|Q9M2Y9|RAX3_ARATH | 2.00E-77 | Transcription factor RAX3 |
| trEMBL | tr|K7LN20|K7LN20_SOYBN | 3.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04880.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 208789 | 210258 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000030.1 | PF00249.26 | Myb_DNA-binding | 14 | 62 | 4.30E-14 |
| Glyur000001s00000030.1 | PF00249.26 | Myb_DNA-binding | 69 | 111 | 6.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.426 |
| SRR1783600 | control | 8.484 |
| SRR1783602 | moderate drought stress | 7.950 |
| SRR1811619 | moderate drought stress | 7.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.161 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.096 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.220 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.229 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.975 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.115 |
| SRR2967015 | Control (Tissue:root) | 12.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.394 |
| SRR9715740 | Leave | 0.356 |
| SRR9715741 | Leave | 0.162 |
| SRR9715739 | Root | 1.062 |
| SRR9715742 | Root | 2.300 |
| SRR9715743 | Root | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.177 |
| SRR8749028 | MeJA induced 9h | 23.893 |
| SRR8749029 | MeJA induced 9h | 29.403 |
| SRR8749030 | Uninduced | 39.476 |
| SRR8749031 | Uninduced | 20.450 |
| SRR8749032 | Uninduced | 20.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.937 |
| SRR8400027 | Control-Root | 18.327 |