Gene detail information of Glyur000001s00000044.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02810.1 | 3.00E-55 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003535331.2 | 6.03E-85 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] |
| COG | YP_007225325.1 | 6.00E-19 | pectin methylesterase [Echinicola vietnamensis DSM 17526] |
| Swissprot | tr|Q9SRX4|PME7_ARATH | 2.00E-64 | Pectinesterase 7 (Precursor) |
| trEMBL | tr|K7N5A8|K7N5A8_SOYBN | 6.00E-92 | Pectinesterase {ECO:0000256|RuleBase:RU000589} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 256057 | 257329 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000044.1 | PF01095.14 | Pectinesterase | 100 | 256 | 9.90E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.046 |
| SRR1783600 | control | 0.055 |
| SRR1783602 | moderate drought stress | 0.048 |
| SRR1811619 | moderate drought stress | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.552 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.204 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.418 |
| SRR2967015 | Control (Tissue:root) | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.075 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.023 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.073 |
| SRR8400027 | Control-Root | 0.000 |