Gene detail information of Glyur000001s00000045.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27870.1 | 1.00E-137 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | KHN01292.1 | 0 | Putative pectinesterase/pectinesterase inhibitor 28 [Glycine soja] |
| COG | YP_006407803.1 | 4.00E-37 | pectin methylesterase [Belliella baltica DSM 15883] |
| Swissprot | tr|Q8GX86|PME21_ARATH | 6.00E-159 | Pectinesterase 21 |
| trEMBL | tr|I1KGU8|I1KGU8_SOYBN | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 257365 | 269418 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000045.1 | PF04043.10 | PMEI | 103 | 253 | 5.10E-28 |
| Glyur000001s00000045.1 | PF01095.14 | Pectinesterase | 296 | 509 | 3.50E-92 |
| Glyur000001s00000045.1 | PF04043.10 | PMEI | 564 | 716 | 3.50E-29 |
| Glyur000001s00000045.1 | PF01095.14 | Pectinesterase | 824 | 1023 | 6.30E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.033 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.039 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.056 |
| SRR2967015 | Control (Tissue:root) | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.095 |
| SRR9715740 | Leave | 0.011 |
| SRR9715741 | Leave | 0.097 |
| SRR9715739 | Root | 0.112 |
| SRR9715742 | Root | 0.091 |
| SRR9715743 | Root | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.088 |
| SRR8749032 | Uninduced | 0.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.022 |
| SRR8400027 | Control-Root | 0.022 |