Gene detail information of Glyur000001s00000061.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05545.1 | 1.00E-67 | RING/U-box superfamily protein |
| NR | XP_003556518.1 | 0 | PREDICTED: uncharacterized protein LOC100789014 isoform X1 [Glycine max] |
| trEMBL | tr|I1NJ17|I1NJ17_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 328539 | 335775 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000061.1 | PF13639.1 | zf-RING_2 | 32 | 78 | 1.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 89.261 |
| SRR1783600 | control | 89.220 |
| SRR1783602 | moderate drought stress | 76.759 |
| SRR1811619 | moderate drought stress | 76.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 68.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 67.791 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.151 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 68.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.414 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.878 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 75.623 |
| SRR2868004 | Drought Stress(Tissue:root) | 73.359 |
| SRR2967015 | Control (Tissue:root) | 75.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 43.313 |
| SRR9715740 | Leave | 52.009 |
| SRR9715741 | Leave | 57.351 |
| SRR9715739 | Root | 63.661 |
| SRR9715742 | Root | 67.077 |
| SRR9715743 | Root | 63.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.128 |
| SRR8749028 | MeJA induced 9h | 38.172 |
| SRR8749029 | MeJA induced 9h | 35.549 |
| SRR8749030 | Uninduced | 35.430 |
| SRR8749031 | Uninduced | 44.129 |
| SRR8749032 | Uninduced | 37.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 77.016 |
| SRR8400027 | Control-Root | 76.157 |