Gene detail information of Glyur000001s00000078.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G27650.12.00E-138Tudor/PWWP/MBT superfamily protein
NRXP_003555609.10PREDICTED: uncharacterized protein LOC100792700 [Glycine max]
Swissprottr|Q9M3G7|ATM_ARATH8.00E-08Serine/threonine-protein kinase ATM
trEMBLtr|K7N598|K7N598_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37950.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001400025404093-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17398DNMT3A EC:2.1.1.37 Cysteine and methionine metabolism map00270
MicroRNAs in cancermap05206


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000078.1PF00855.12PWWP1282133.10E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.174
SRR1783600control12.019
SRR1783602moderate drought stress13.920
SRR1811619moderate drought stress14.425

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.642
DRR006520Root Summer glycyrrhizin high producing strain13.566
DRR006521Root Winter glycyrrhizin high producing strain8.626
DRR006522Root Winter glycyrrhizin high producing strain8.347
DRR006523Root Summer glycyrrhizin low producing strain13.730
DRR006524Root Summer glycyrrhizin low producing strain14.125
DRR006525Leaf Summer glycyrrhizin high producing strain15.679
DRR006526Leaf Summer glycyrrhizin high producing strain15.600

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.835
SRR2868004Drought Stress(Tissue:root)18.306
SRR2967015Control (Tissue:root)20.649

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.221
SRR9715740Leave13.728
SRR9715741Leave10.778
SRR9715739Root4.930
SRR9715742Root10.058
SRR9715743Root8.447

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.109
SRR8749028MeJA induced 9h10.031
SRR8749029MeJA induced 9h7.398
SRR8749030Uninduced5.325
SRR8749031Uninduced4.852
SRR8749032Uninduced4.461

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.341
SRR8400027Control-Root12.913

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved