Gene detail information of Glyur000001s00000082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09060.2 | 0 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase |
| NR | AES61379.2 | 0 | transcription factor jumonji domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SSE9|JMJ25_ARATH | 2.00E-95 | Lysine-specific demethylase JMJ25 |
| trEMBL | tr|G7I8M9|G7I8M9_MEDTR | 0 | Transcription factor jumonji domain protein {ECO:0000313|EMBL:AES61379.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 428707 | 436187 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000082.1 | PF08879.5 | WRC | 22 | 62 | 3.60E-14 |
| Glyur000001s00000082.1 | PF10497.4 | zf-4CXXC_R1 | 215 | 282 | 2.50E-06 |
| Glyur000001s00000082.1 | PF02373.17 | JmjC | 822 | 867 | 4.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.845 |
| SRR1783600 | control | 22.015 |
| SRR1783602 | moderate drought stress | 28.933 |
| SRR1811619 | moderate drought stress | 28.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.894 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.664 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.863 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.612 |
| SRR2967015 | Control (Tissue:root) | 35.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.880 |
| SRR9715740 | Leave | 27.475 |
| SRR9715741 | Leave | 29.519 |
| SRR9715739 | Root | 4.631 |
| SRR9715742 | Root | 22.000 |
| SRR9715743 | Root | 20.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.215 |
| SRR8749028 | MeJA induced 9h | 22.328 |
| SRR8749029 | MeJA induced 9h | 15.760 |
| SRR8749030 | Uninduced | 10.617 |
| SRR8749031 | Uninduced | 10.383 |
| SRR8749032 | Uninduced | 10.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 40.543 |
| SRR8400027 | Control-Root | 42.257 |