Gene detail information of Glyur000001s00000088.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09030.1 | 7.00E-40 | nuclear factor Y, subunit B4 |
| NR | XP_007144936.1 | 3.48E-61 | hypothetical protein PHAVU_007G195900g [Phaseolus vulgaris] |
| Swissprot | tr|O04027|NFYB4_ARATH | 3.00E-50 | Nuclear transcription factor Y subunit B-4 |
| trEMBL | tr|V7BHD2|V7BHD2_PHAVU | 1.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:ESW16930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 472246 | 473640 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000088.1 | PF00808.18 | CBFD_NFYB_HMF | 11 | 75 | 5.60E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.029 |
| SRR1783600 | control | 1.009 |
| SRR1783602 | moderate drought stress | 0.292 |
| SRR1811619 | moderate drought stress | 0.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.012 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.577 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.337 |
| SRR2967015 | Control (Tissue:root) | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.114 |
| SRR9715742 | Root | 0.234 |
| SRR9715743 | Root | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.635 |
| SRR8400027 | Control-Root | 0.374 |