Gene detail information of Glyur000001s00000098.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55000.3 | 6.00E-79 | peptidoglycan-binding LysM domain-containing protein |
| NR | XP_004495726.1 | 2.33E-176 | PREDICTED: F-box protein At1g55000-like [Cicer arietinum] |
| Swissprot | tr|Q9FZ32|FB60_ARATH | 5.00E-98 | F-box protein At1g55000 |
| trEMBL | tr|A0A059PC02|A0A059PC02_CICAR | 2.00E-175 | F-box protein LysM {ECO:0000313|EMBL:AGH13617.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 532551 | 535354 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000098.1 | PF12937.2 | F-box-like | 61 | 90 | 3.70E-07 |
| Glyur000001s00000098.1 | PF01476.15 | LysM | 130 | 173 | 9.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.630 |
| SRR1783600 | control | 13.792 |
| SRR1783602 | moderate drought stress | 13.095 |
| SRR1811619 | moderate drought stress | 12.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.744 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.693 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.313 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.822 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.891 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.890 |
| SRR2967015 | Control (Tissue:root) | 17.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.475 |
| SRR9715740 | Leave | 34.212 |
| SRR9715741 | Leave | 30.938 |
| SRR9715739 | Root | 23.116 |
| SRR9715742 | Root | 21.412 |
| SRR9715743 | Root | 19.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.830 |
| SRR8749028 | MeJA induced 9h | 15.446 |
| SRR8749029 | MeJA induced 9h | 10.536 |
| SRR8749030 | Uninduced | 10.319 |
| SRR8749031 | Uninduced | 6.302 |
| SRR8749032 | Uninduced | 10.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.056 |
| SRR8400027 | Control-Root | 22.857 |