Gene detail information of Glyur000001s00000103.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09010.10glycoside hydrolase family 2 protein
NRAES61359.20endo-beta-mannosidase-like mannosylglycoprotein [Medicago truncatula]
COGYP_007226090.10beta-galactosidase/beta-glucuronidase [Echinicola vietnamensis DSM 17526]
Swissprottr|Q5H7P5|EBM_LILLO0Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit
trEMBLtr|G7I838|G7I838_MEDTR0Endo-beta-mannosidase-like mannosylglycoprotein {ECO:0000313|EMBL:AES61359.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001548625554875-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0033947  mannosylglycoprotein endo-beta-mannosidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000103.1PF02837.13Glyco_hydro_2_N831573.00E-09
Glyur000001s00000103.1PF00703.16Glyco_hydro_22133319.50E-11
Glyur000001s00000103.1PF02836.12Glyco_hydro_2_C3464742.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.560
SRR1783600control9.629
SRR1783602moderate drought stress3.962
SRR1811619moderate drought stress3.897

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.350
DRR006520Root Summer glycyrrhizin high producing strain4.411
DRR006521Root Winter glycyrrhizin high producing strain0.325
DRR006522Root Winter glycyrrhizin high producing strain0.326
DRR006523Root Summer glycyrrhizin low producing strain1.580
DRR006524Root Summer glycyrrhizin low producing strain1.556
DRR006525Leaf Summer glycyrrhizin high producing strain10.746
DRR006526Leaf Summer glycyrrhizin high producing strain10.606

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.090
SRR2868004Drought Stress(Tissue:root)3.799
SRR2967015Control (Tissue:root)4.911

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.613
SRR9715740Leave7.513
SRR9715741Leave5.030
SRR9715739Root1.044
SRR9715742Root4.183
SRR9715743Root3.101

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.465
SRR8749028MeJA induced 9h0.339
SRR8749029MeJA induced 9h0.415
SRR8749030Uninduced0.077
SRR8749031Uninduced0.049
SRR8749032Uninduced0.067

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.558
SRR8400027Control-Root10.544

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved