Gene detail

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Gene detail information of Glyur000001s00000104.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54940.1	9.00E-141	plant glycogenin-like starch initiation protein 4
NR	XP_003535341.1	0	PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like [Glycine max]
COG	YP_769553.1	2.00E-17	glycosyl transferase (sulfolipid biosynthesis) protein [Rhizobium leguminosarum bv. viciae 3841]
Swissprot	tr\|Q9FZ37\|GUX4_ARATH	3.00E-177	Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4
trEMBL	tr\|I1LBC7\|I1LBC7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G29570.1}

Sequence

Transcript Sequence

>Glyur000001s00000104.1
ATGGCGTCTAAGTCATCCTCTTCTCTTTTGTCTTCAAAACAAAAAACTTTTCTCATTCTCATACTTGTTATCTCCATAAACCTCACACTCTTTGTAGTACTTTCAGTGAAGGCCACCAAAAGAGTCCCTATTAGGACCACCAACATGTTTCAAGTGGATACAAGAATAATAAAGCCAACTTGGTTTGATATCATAGGAAAAAACATTGATCATAGCAAGAGGATTAAGATAGGCCTAGTTAATATCAATGCAAGAGGAGTTGATGGTAGTCTTCATGAACAACTAGATNCACTGTACCCACAAGTAGAAACAGTGTCTGTTGATTTTGATCGTGTTGATGAGAGCTTGAAATGGAAAGACTTTTTCCCTGTGTGGATTGATGAAGATGAGAAATGGGGTCATCCACCAAAGTGTCCTGATTTGCCAATGCCAACNTGGGAGAGCTATAGAGATATCAATGTGGTAGTGGCCAGAGTCCCATGTGGGATTAGGGATGTGTTTAGGTTGCAAGTTAACTTGGTGGTGGCTAATTTGGCAGTGGAGAGTGGATGGGTAATGAAGCTGGATGCTTATGAACCAGTTTATGTTGTGTTCATTGGGTCATCATGTGGCCCCATGGTAGAGATTTTCAGGTGTGANGACCTATTGTTGCATCAATCAGGTGAAGATGAGTACTGGGTGTACAAGCCTGATTTGTGGAGACTCAGGCAGAAAATGCTTATGCCTGTTGGTTCATGCCAGCTTGCTCCTGGTTATGCAGAAACAGGCAAAGAGGTATGGAAAGCCTATCTGTCCCAATCACCACCAGAGACACTGAAACTGAAATACAATCACACCACGCGCGTCCCAAAAGTAGCCTATGTCACAGTCCTCCACTCCTCAGAAGCCTATGTTTGTGGTGCAATAGCACTGGCACAAAGCATACTCNGAACAGAGAAACAAGAAAGCACCCTCCTGCAATTCCTATACAACAACTACTACACCAAACACTTACTCCTCCTTGCCGATGACTCAATAAGTCCCAAATCCACAAAGGGTCTAAAAGCCGCAGGGTGGAAGATCAAGCGCATCAAACGCATCCTNAACCCCTTTGCACAAAAGGGTACCTACAACGAGTGGAACTATAGCAAACTCCGAATTTGGGAACTCACCATGTATGACAAGATCATCTTTTTAGATTCAGATCTTCTAGTACTCAAGAATCTCGATGGTTTCTTCGCATACCCTCAATTATCAGCTGCACCCAATGACTTCACTCTGTTCAATTCAGGGGTTATGGTGATTGAGCCTTCGCAGTGCATGTTCGAGGAGTTGATGAGGAAAAGTTTGAAGGTGAAACCGTACAATGGGGGTGACCAAGGTTTGATCAATGAGGTCTTCACTTGGTGGCATCGGTTGCCAACAAAGGTTAACTTTTTGAAGAGTTTTCAAGAGCGTGAAGGGAATAATAGCTATGAAGAGGGTATTGTTCCGGTGGANGAGTTGTATGCGATGCATTACTCGGGTTTGAAGCCGTGGATGTGTTACAGAGATTATGACTGTAACTGGGACATGCGGGTGCTTCATGTTTTTGCAAGTGATTTGGCTCACAGAATGTGGTGGGAAGTTTATGATGGGATGCCCAATGAGTTGAAAGGGTATTGTGGGCTTACGAAGAAAATGGATGAGAGGATAATGAAACGGAGAGAGAGAGCAAGGAATGCTAGTTTGCCTGATGGGCATTGGAAGATTGAGGTTAAGGATCCTAGAAGGAACCATTACNAGGACTTGGGTTTAATTAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	558445	560817	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009834 plant-type secondary cell wall biogenesis

GO:0045492 xylan biosynthetic process

cellular_component GO:0005794 Golgi apparatus molecular_function GO:0015020 glucuronosyltransferase activity GO:0016757 transferase activity, transferring glycosyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000104.1	PF01501.15	Glyco_transf_8	288	508	5.10E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.362
SRR1783600	control	0.389
SRR1783602	moderate drought stress	0.341
SRR1811619	moderate drought stress	0.319

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.364
DRR006520	Root Summer glycyrrhizin high producing strain	0.359
DRR006521	Root Winter glycyrrhizin high producing strain	0.420
DRR006522	Root Winter glycyrrhizin high producing strain	0.388
DRR006523	Root Summer glycyrrhizin low producing strain	0.229
DRR006524	Root Summer glycyrrhizin low producing strain	0.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.572
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.754
SRR2868004	Drought Stress(Tissue:root)	1.962
SRR2967015	Control (Tissue:root)	1.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.222
SRR9715740	Leave	0.450
SRR9715741	Leave	0.520
SRR9715739	Root	0.140
SRR9715742	Root	0.103
SRR9715743	Root	0.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.439
SRR8749028	MeJA induced 9h	0.507
SRR8749029	MeJA induced 9h	0.351
SRR8749030	Uninduced	0.680
SRR8749031	Uninduced	0.407
SRR8749032	Uninduced	0.459

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.980
SRR8400027	Control-Root	11.624