Gene detail information of Glyur000001s00000107.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G27470.10seryl-tRNA synthetase / serine--tRNA ligase
NRKHN16130.10Serine--tRNA ligase [Glycine soja]
COGYP_003424689.17.00E-143seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
Swissprottr|O81983|SYS_HELAN0Serine--tRNA ligase
trEMBLtr|I1LBD0|I1LBD0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G29600.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001572794576735-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01875SARS, serS EC:6.1.1.11 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006434  seryl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004828  serine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000107.1PF02403.17Seryl_tRNA_N11121.90E-29
Glyur000001s00000107.1PF00587.20tRNA-synt_2b1773491.00E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.602
SRR1783600control40.701
SRR1783602moderate drought stress50.559
SRR1811619moderate drought stress50.637

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain74.604
DRR006520Root Summer glycyrrhizin high producing strain73.384
DRR006521Root Winter glycyrrhizin high producing strain57.813
DRR006522Root Winter glycyrrhizin high producing strain56.637
DRR006523Root Summer glycyrrhizin low producing strain75.528
DRR006524Root Summer glycyrrhizin low producing strain75.572
DRR006525Leaf Summer glycyrrhizin high producing strain28.928
DRR006526Leaf Summer glycyrrhizin high producing strain28.597

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)78.411
SRR2868004Drought Stress(Tissue:root)62.945
SRR2967015Control (Tissue:root)64.432

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.534
SRR9715740Leave38.235
SRR9715741Leave39.057
SRR9715739Root21.525
SRR9715742Root42.685
SRR9715743Root38.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h87.261
SRR8749028MeJA induced 9h50.321
SRR8749029MeJA induced 9h59.718
SRR8749030Uninduced22.872
SRR8749031Uninduced18.243
SRR8749032Uninduced20.484

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root74.423
SRR8400027Control-Root65.357

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved