Gene detail information of Glyur000001s00000123.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08970.42.00E-58nuclear factor Y, subunit C9
NRXP_004495741.11.36E-140PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 [Cicer arietinum]
Swissprottr|Q8L4B2|NFYC9_ARATH5.00E-81Nuclear transcription factor Y subunit C-9
trEMBLtr|I3TAX9|I3TAX9_MEDTR7.00E-135Nuclear transcription factor Y subunit C2 {ECO:0000313|EMBL:AFK49671.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001616570618125-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC
EAR motif-containing ProteinsNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000123.1PF00808.18CBFD_NFYB_HMF1011645.50E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.244
SRR1783600control23.554
SRR1783602moderate drought stress38.451
SRR1811619moderate drought stress36.532

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain64.203
DRR006520Root Summer glycyrrhizin high producing strain65.186
DRR006521Root Winter glycyrrhizin high producing strain65.584
DRR006522Root Winter glycyrrhizin high producing strain62.269
DRR006523Root Summer glycyrrhizin low producing strain42.708
DRR006524Root Summer glycyrrhizin low producing strain41.819
DRR006525Leaf Summer glycyrrhizin high producing strain28.503
DRR006526Leaf Summer glycyrrhizin high producing strain28.663

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.111
SRR2868004Drought Stress(Tissue:root)50.110
SRR2967015Control (Tissue:root)50.407

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.386
SRR9715740Leave33.880
SRR9715741Leave32.629
SRR9715739Root28.764
SRR9715742Root40.724
SRR9715743Root36.209

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h88.958
SRR8749028MeJA induced 9h40.897
SRR8749029MeJA induced 9h54.397
SRR8749030Uninduced22.931
SRR8749031Uninduced17.606
SRR8749032Uninduced18.615

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root63.957
SRR8400027Control-Root54.175

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved