Gene detail information of Glyur000001s00000128.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54820.1 | 5.00E-131 | Protein kinase superfamily protein |
| NR | XP_003591076.1 | 0 | Protein kinase 2B [Medicago truncatula] |
| COG | YP_001958461.1 | 1.00E-35 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q0WRY5|CDL1_ARATH | 2.00E-100 | Serine/threonine-protein kinase CDL1 {ECO:0000305} |
| trEMBL | tr|G7I806|G7I806_MEDTR | 0 | Serine/Threonine kinase family protein {ECO:0000313|EMBL:AES61327.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 646489 | 649587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.2.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000128.1 | PF00069.20 | Pkinase | 154 | 422 | 3.70E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.711 |
| SRR1783600 | control | 2.720 |
| SRR1783602 | moderate drought stress | 2.860 |
| SRR1811619 | moderate drought stress | 2.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.008 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.970 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.013 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.214 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.127 |
| SRR2967015 | Control (Tissue:root) | 3.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.207 |
| SRR9715740 | Leave | 6.023 |
| SRR9715741 | Leave | 10.292 |
| SRR9715739 | Root | 0.575 |
| SRR9715742 | Root | 1.032 |
| SRR9715743 | Root | 1.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.631 |
| SRR8749028 | MeJA induced 9h | 5.356 |
| SRR8749029 | MeJA induced 9h | 3.647 |
| SRR8749030 | Uninduced | 0.820 |
| SRR8749031 | Uninduced | 0.635 |
| SRR8749032 | Uninduced | 0.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.683 |
| SRR8400027 | Control-Root | 1.429 |