Gene detail information of Glyur000001s00000131.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05200.12.00E-57RING/U-box superfamily protein
NRXP_003591073.10RING finger family protein [Medicago truncatula]
Swissprottr|Q8RXX9|ATL6_ARATH1.00E-88E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBLtr|G7I803|G7I803_MEDTR0Zinc finger, C3HC4 type (RING finger) protein, putative {ECO:0000313|EMBL:AES61324.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001663431664570-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000131.1PF13639.1zf-RING_21291729.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.805
SRR1783600control21.199
SRR1783602moderate drought stress25.384
SRR1811619moderate drought stress23.806

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain155.611
DRR006520Root Summer glycyrrhizin high producing strain153.540
DRR006521Root Winter glycyrrhizin high producing strain45.488
DRR006522Root Winter glycyrrhizin high producing strain44.933
DRR006523Root Summer glycyrrhizin low producing strain358.602
DRR006524Root Summer glycyrrhizin low producing strain359.175
DRR006525Leaf Summer glycyrrhizin high producing strain45.707
DRR006526Leaf Summer glycyrrhizin high producing strain47.208

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.098
SRR2868004Drought Stress(Tissue:root)251.611
SRR2967015Control (Tissue:root)309.134

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave202.748
SRR9715740Leave220.125
SRR9715741Leave264.684
SRR9715739Root816.989
SRR9715742Root403.666
SRR9715743Root462.798

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h258.704
SRR8749028MeJA induced 9h183.956
SRR8749029MeJA induced 9h211.588
SRR8749030Uninduced135.942
SRR8749031Uninduced68.175
SRR8749032Uninduced164.639

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root88.474
SRR8400027Control-Root129.060

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved