Gene detail information of Glyur000001s00000134.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72210.1 | 1.00E-59 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007144754.1 | 6.87E-167 | hypothetical protein PHAVU_007G181900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C7T4|BH096_ARATH | 7.00E-77 | Transcription factor bHLH96 |
| trEMBL | tr|V7BIG2|V7BIG2_PHAVU | 3.00E-167 | Uncharacterized protein {ECO:0000313|EMBL:ESW16748.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 690583 | 693144 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000134.1 | PF00010.21 | HLH | 164 | 215 | 1.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.813 |
| SRR1783600 | control | 36.060 |
| SRR1783602 | moderate drought stress | 27.399 |
| SRR1811619 | moderate drought stress | 27.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.768 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.430 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.121 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.320 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.825 |
| SRR2967015 | Control (Tissue:root) | 6.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.612 |
| SRR9715740 | Leave | 0.028 |
| SRR9715741 | Leave | 0.217 |
| SRR9715739 | Root | 18.920 |
| SRR9715742 | Root | 11.508 |
| SRR9715743 | Root | 12.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.520 |
| SRR8749028 | MeJA induced 9h | 4.484 |
| SRR8749029 | MeJA induced 9h | 1.841 |
| SRR8749030 | Uninduced | 2.850 |
| SRR8749031 | Uninduced | 1.415 |
| SRR8749032 | Uninduced | 2.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 53.214 |
| SRR8400027 | Control-Root | 85.939 |