Gene detail information of Glyur000001s00000149.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05140.1 | 7.00E-104 | ROP binding protein kinases 2 |
| NR | XP_004495756.1 | 0 | PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Cicer arietinum] |
| COG | YP_003828009.1 | 4.00E-10 | serine/threonine protein kinase with PASTA sensor(s) [Acetohalobium arabaticum DSM 5501] |
| Swissprot | tr|Q8RXC8|RBK2_ARATH | 2.00E-148 | Receptor-like cytosolic serine/threonine-protein kinase RBK2 |
| trEMBL | tr|G7I7G7|G7I7G7_MEDTR | 0 | Receptor-like cytosolic Serine/Threonine-kinase {ECO:0000313|EMBL:AES61303.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 746483 | 750129 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.10.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000149.1 | PF07714.12 | Pkinase_Tyr | 166 | 250 | 2.50E-13 |
| Glyur000001s00000149.1 | PF00069.20 | Pkinase | 269 | 334 | 5.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.126 |
| SRR1783600 | control | 0.089 |
| SRR1783602 | moderate drought stress | 0.023 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.083 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.036 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.212 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.408 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.467 |
| SRR2967015 | Control (Tissue:root) | 0.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.080 |
| SRR9715740 | Leave | 0.079 |
| SRR9715741 | Leave | 0.164 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.038 |
| SRR9715743 | Root | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.299 |
| SRR8749028 | MeJA induced 9h | 3.885 |
| SRR8749029 | MeJA induced 9h | 3.297 |
| SRR8749030 | Uninduced | 0.794 |
| SRR8749031 | Uninduced | 1.756 |
| SRR8749032 | Uninduced | 1.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.085 |
| SRR8400027 | Control-Root | 0.131 |