Gene detail information of Glyur000001s00000156.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06350.12.00E-160dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
NRKHN20188.10Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Glycine soja]
COGYP_003372532.15.00E-81shikimate 5-dehydrogenase [Pirellula staleyi DSM 6068]
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|K7N563|K7N563_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37400.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001788871793683-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13832aroDE, DHQ-SDH EC:4.2.1.10 1.1.1.25 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003855  3-dehydroquinate dehydratase activity

GO:0004764  shikimate 3-dehydrogenase (NADP+) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000156.1PF01487.10DHquinase_I272235.80E-51
Glyur000001s00000156.1PF08501.6Shikimate_dh_N2383155.80E-22
Glyur000001s00000156.1PF01488.15Shikimate_DH3574527.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.570
SRR1783600control0.601
SRR1783602moderate drought stress1.163
SRR1811619moderate drought stress1.120

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.546
DRR006520Root Summer glycyrrhizin high producing strain1.468
DRR006521Root Winter glycyrrhizin high producing strain0.072
DRR006522Root Winter glycyrrhizin high producing strain0.071
DRR006523Root Summer glycyrrhizin low producing strain0.294
DRR006524Root Summer glycyrrhizin low producing strain0.418
DRR006525Leaf Summer glycyrrhizin high producing strain0.340
DRR006526Leaf Summer glycyrrhizin high producing strain0.291

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.099
SRR2868004Drought Stress(Tissue:root)5.471
SRR2967015Control (Tissue:root)6.683

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.390
SRR9715740Leave0.048
SRR9715741Leave0.401
SRR9715739Root0.218
SRR9715742Root1.845
SRR9715743Root0.955

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.273
SRR8749028MeJA induced 9h2.894
SRR8749029MeJA induced 9h0.668
SRR8749030Uninduced1.614
SRR8749031Uninduced1.814
SRR8749032Uninduced2.596

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.238
SRR8400027Control-Root4.153

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved