Gene detail

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Gene detail information of Glyur000001s00000166.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05090.2	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_004495771.1	0	PREDICTED: WD repeat-containing protein 48-like [Cicer arietinum]
COG	YP_007163236.1	1.00E-20	WD-40 repeat-containing protein [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	3.00E-13	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A072VMJ6\|A0A072VMJ6_MEDTR	0	Transducin/WD40 repeat protein {ECO:0000313\|EMBL:KEH43052.1}

Sequence

Transcript Sequence

>Glyur000001s00000166.1
AAAACAGCGAGCACAAGTACGGATTTTCCATATACAGATTTAATCCTGACATGGAAAGACGATCTTATCCTCGATTGAAAAACACAAACTGAGTCAAATAACCAGCCATAATCAAAATTTGCATCCTTCTTCACTCTCTTCCTCTTCCCTTCTCTATCTTTCTCGGACACAAAACTTGTTTTTCTCCACAAAGTCGAAGCCTCCGCTATAGAAAATAGCAAGCAAACAAACAAGCTGAAAATAGAGCCAAACATTCATCACTGATCGAGTTACGGCAATGCACCGCGTGGGTAGTGCAGGGAACACAAATAATTCAACTCGCCCGCGTAAGGAAAAGAGATTAACATATGTGTTGAATGATTCTGATTACTCAAAGCATTGTGCAGGCATAAATTGTTTGGCGGTACTTAAGTCTGCAGTATCTGACGGGTCTGATTTTCTCTTCACTGGGAGCCGGGATGGCAAGCTAAAACGGTGGGCACTAGCTGAGGATGCAGCAACGTGCTGTGCTACCTTTGAATCTCACATGGACTGGGTAAATGGTGCACTTCTTGTGGGNGACAGTACACTTGTTTCTTGTTCTTCAGATACAACCGTTAAGACGTGGAATGCCTTGTCCCATGGAACATGTACTAGGACGCTCTGCCAACACTCAGATTATGTTACATGCCTTGCAGCAGCTGAAAAAAATAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGAGAGGTTTTTATATGGGATATTGAAGCTGCACTTGTTTCAGCTGCAAANTGCAATGATGCTATGGATGAAGATGCTTCAAATGGTGTCAATGGTTCTGGCAACTCATTACCAAAGACAAGCTTACGTTCGATCAGCTCTAGCAACAGTATATCCATGCACACTTCTCAAACTCAAGGATACATTCCAATTGCTGCCAAAGGCCATAAGGAATCCGTATATGCACTGGCAATGAATGAAGGTGGAACACTTCTTGTCTCCGGTGGTACAGAAAAGGTTGTACGGGTTTGGGATCCAAGATCTGGATCAAAGACTTTGAAGCTAAAAGGGCATACAGATAACATTAGGACTTTGCTTTTGGACTCTACCGGCAGGCTTTGGGATCTTGGTCAGCAACGTTGTGTGCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCTAGCAACTCAACGTTTAGTCATGTTTATAGTGGTGGTAGAGACTTTTCATTATACTTGACAGACTTGCAAACTAGAGAGAGTGTTTTGCTTTGCACTGGGGAACATCCGATTCTTCAATTGACTTTGCATGATGATAGCATATGGGTTGCATCAACAGACTCTTCAGTTCACAGATGGCCCACTGAAGGACGCAACCCTCAAAATATTTTCCAAAGAGGCAATTCTTTTTTAGCTGGAAATTTGTCATTTTCAAGAGCAAGGGTGTCGCTAGAAGGATCTACCCCGGTTCCTGTATATAAACAGCCAATCTTAACTATTCCTGGCATCCCTGCAATAGTACAGCATGAAGTTTTAAATAATAAAAGGCATGTCCTGACAAAGGATACTTCTGGTTCAGTGAAGTTGTGGGAAATCATGAAAGGTGTTGCAATTGAAGATTATGGAAAGGTTTCAATCGAGGAGAAAAAGGAAGAGCTATTTGAGATGGTTAGCATTCCTGCATGGTTCACAGTGGATACCAGGCTTGGAAGTTTGTCTGTACATTTGGACACTCCCCAGTGCTTTTCTGCAGAGATGTATTCACAAGAGCTTAACATTGTAGGCAAGTCTGAAGATGATAAGATTAACTTGGCTCGAGAAACACTGAAAGGACTCTTGGCTCATTGGTTGAGAAAAAGGATGGGAACTCCTGCCCCTGCTAATGGGGAATTATTACCTGGAAAGGATATTGGTACCAGAAGCCTTTCACATTCAAGAATTGAGGCTGACGGAAATTCTGAGAATGATGCTATGGTTTATCCTCCATTTGAATTCTCAATTGTTTCCCCTCCTTCCATTGTTACTGAGGGAACTCATGGAGGTCTGTGGAGGAAAAAAATGACTGATTTAGATGGAACTGAGGATGATAAAGACTTCCCGTTTTGGTGTCTGGACTGTGTATTGAATAATCAATTACCTCCTAGAGAAAGTACCAAATGCAGTTTCTTTTTACATCCTTGTGAAGGCTCTAATGCCCAGATCCTCACTCAAGGGAAGCTAAGCGCTCCGCGTATATTAAGAATTCATAAAGTTATTAATTATATTGTAGAAAAGATGGTGCTTGACAAACCTCTGGATAGTGCCAANGCTGATGGTAATTTCCCCCCTGGACTTGCTGGGTCACAGTTACAGAACCAAGCAATATTGTCTCCGGAAATGAGCTTAGCCACAGTGCGAGCTTATATATGGAAGAAAACAGATGACATGGTCCTAAATTACAGAATAAATCAAGGGAGGTTTTCTTGTGATTGTGTTAAACAACTTCTGAGCAATGATTCTTCTGGGGTGCCTGCCTGCTTTGATCACTGGAGCATACTTTCAGTGGACATGACCGGACTCGGGGATTCTGTGTCTGCAAGATGGAGTATTTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	852161	863686	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000166.1	PF00400.27	WD40	32	67	0.0043
Glyur000001s00000166.1	PF00400.27	WD40	75	111	0.0016
Glyur000001s00000166.1	PF00400.27	WD40	116	155	0.00018
Glyur000001s00000166.1	PF00400.27	WD40	215	246	0.00049
Glyur000001s00000166.1	PF00400.27	WD40	281	316	0.031
Glyur000001s00000166.1	PF11816.3	DUF3337	412	720	7.10E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.023
SRR1783600	control	3.994
SRR1783602	moderate drought stress	5.167
SRR1811619	moderate drought stress	5.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.531
DRR006520	Root Summer glycyrrhizin high producing strain	3.440
DRR006521	Root Winter glycyrrhizin high producing strain	5.780
DRR006522	Root Winter glycyrrhizin high producing strain	5.669
DRR006523	Root Summer glycyrrhizin low producing strain	4.257
DRR006524	Root Summer glycyrrhizin low producing strain	4.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.845
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.873

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.249
SRR2868004	Drought Stress(Tissue:root)	15.794
SRR2967015	Control (Tissue:root)	15.912

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	10.512
SRR9715740	Leave	9.018
SRR9715741	Leave	11.571
SRR9715739	Root	1.413
SRR9715742	Root	6.821
SRR9715743	Root	5.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.573
SRR8749028	MeJA induced 9h	28.427
SRR8749029	MeJA induced 9h	19.757
SRR8749030	Uninduced	11.388
SRR8749031	Uninduced	19.003
SRR8749032	Uninduced	15.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	14.176
SRR8400027	Control-Root	12.784