Gene detail information of Glyur000001s00000178.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43750.24.00E-101O-acetylserine (thiol) lyase B
NRXP_006588424.11.14E-162PREDICTED: uncharacterized protein LOC100775420 isoform X1 [Glycine max]
COGNP_811992.13.00E-97cysteine synthase A [Bacteroides thetaiotaomicron VPI-5482]
Swissprottr|Q43317|CYSK_CITLA5.00E-131Cysteine synthase
trEMBLtr|I1LBI3|I1LBI3_SOYBN4.00E-163Cysteine synthase {ECO:0000256|RuleBase:RU003985}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001924246928092-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01738cysK EC:2.5.1.47 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006535  cysteine biosynthetic process from serine


molecular_function

GO:0004124  cysteine synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000178.1PF00291.20PALP1354093.40E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.532
SRR1783600control11.624
SRR1783602moderate drought stress16.105
SRR1811619moderate drought stress16.326

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.395
DRR006520Root Summer glycyrrhizin high producing strain16.681
DRR006521Root Winter glycyrrhizin high producing strain12.280
DRR006522Root Winter glycyrrhizin high producing strain11.598
DRR006523Root Summer glycyrrhizin low producing strain19.786
DRR006524Root Summer glycyrrhizin low producing strain20.651
DRR006525Leaf Summer glycyrrhizin high producing strain19.662
DRR006526Leaf Summer glycyrrhizin high producing strain20.380

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.004
SRR2868004Drought Stress(Tissue:root)22.840
SRR2967015Control (Tissue:root)22.583

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave40.843
SRR9715740Leave48.538
SRR9715741Leave73.826
SRR9715739Root7.041
SRR9715742Root14.347
SRR9715743Root12.561

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.497
SRR8749028MeJA induced 9h1.485
SRR8749029MeJA induced 9h2.421
SRR8749030Uninduced1.989
SRR8749031Uninduced2.964
SRR8749032Uninduced4.607

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.158
SRR8400027Control-Root30.125

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved