Gene detail information of Glyur000001s00000179.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14880.41.00E-111O-acetylserine (thiol) lyase (OAS-TL) isoform A1
NRXP_003591034.11.32E-177Cysteine synthase [Medicago truncatula]
COGYP_591171.19.00E-108cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q43317|CYSK_CITLA2.00E-167Cysteine synthase
trEMBLtr|G7I7E9|G7I7E9_MEDTR5.00E-178Cysteine synthase {ECO:0000256|RuleBase:RU003985}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001937393941471-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01738cysK EC:2.5.1.47 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006535  cysteine biosynthetic process from serine


molecular_function

GO:0004124  cysteine synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000179.1PF00291.20PALP123113.50E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.548
SRR1783600control0.594
SRR1783602moderate drought stress1.587
SRR1811619moderate drought stress1.619

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.323
DRR006520Root Summer glycyrrhizin high producing strain1.274
DRR006521Root Winter glycyrrhizin high producing strain0.968
DRR006522Root Winter glycyrrhizin high producing strain1.033
DRR006523Root Summer glycyrrhizin low producing strain4.404
DRR006524Root Summer glycyrrhizin low producing strain4.510
DRR006525Leaf Summer glycyrrhizin high producing strain2.533
DRR006526Leaf Summer glycyrrhizin high producing strain2.651

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.755
SRR2868004Drought Stress(Tissue:root)17.098
SRR2967015Control (Tissue:root)14.152

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.035
SRR9715740Leave7.014
SRR9715741Leave6.146
SRR9715739Root0.084
SRR9715742Root0.425
SRR9715743Root0.285

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.308
SRR8749028MeJA induced 9h10.003
SRR8749029MeJA induced 9h5.789
SRR8749030Uninduced34.829
SRR8749031Uninduced19.511
SRR8749032Uninduced14.363

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.216
SRR8400027Control-Root1.104

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved