Gene detail information of Glyur000001s00000180.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54490.10exoribonuclease 4
NRXP_006606479.10PREDICTED: 5'-3' exoribonuclease 4-like isoform X1 [Glycine max]
Swissprottr|Q9FQ04|XRN4_ARATH05'-3' exoribonuclease 4
trEMBLtr|I1NIU2|I1NIU2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37260.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001945512954287+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20553XRN4 EC:3.1.13.- MAPK signaling pathway - plant map04016


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004527  exonuclease activity

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000180.1PF03159.13XRN_N12553.10E-106
Glyur000001s00000180.1PF00098.18zf-CCHC2642784.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.983
SRR1783600control11.084
SRR1783602moderate drought stress15.523
SRR1811619moderate drought stress15.354

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.955
DRR006520Root Summer glycyrrhizin high producing strain7.970
DRR006521Root Winter glycyrrhizin high producing strain13.437
DRR006522Root Winter glycyrrhizin high producing strain13.232
DRR006523Root Summer glycyrrhizin low producing strain9.625
DRR006524Root Summer glycyrrhizin low producing strain9.851
DRR006525Leaf Summer glycyrrhizin high producing strain6.411
DRR006526Leaf Summer glycyrrhizin high producing strain6.239

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.066
SRR2868004Drought Stress(Tissue:root)24.863
SRR2967015Control (Tissue:root)25.338

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.140
SRR9715740Leave10.231
SRR9715741Leave10.047
SRR9715739Root2.553
SRR9715742Root9.172
SRR9715743Root9.025

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.452
SRR8749028MeJA induced 9h11.882
SRR8749029MeJA induced 9h5.996
SRR8749030Uninduced13.710
SRR8749031Uninduced4.644
SRR8749032Uninduced4.122

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.905
SRR8400027Control-Root17.771

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved