Gene detail information of Glyur000001s00000188.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04870.20zeta-carotene desaturase
NRXP_004495784.10PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like isoform X1 [Cicer arietinum]
COGNP_441720.10zeta-carotene desaturase [Synechocystis sp. PCC 6803]
Swissprottr|Q9SMJ3|ZDS_CAPAN0Zeta-carotene desaturase, chloroplastic/chromoplastic (Precursor)
trEMBLtr|G7I6X1|G7I6X1_MEDTR0Zeta-carotene desaturase {ECO:0000313|EMBL:AES61266.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00001980137986445+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00514ZDS, crtQ EC:1.3.5.6 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0016117  carotenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016719  carotene 7,8-desaturase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000188.1PF01593.19Amino_oxidase795496.20E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.270
SRR1783600control16.357
SRR1783602moderate drought stress18.232
SRR1811619moderate drought stress18.126

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.370
DRR006520Root Summer glycyrrhizin high producing strain27.249
DRR006521Root Winter glycyrrhizin high producing strain20.595
DRR006522Root Winter glycyrrhizin high producing strain19.564
DRR006523Root Summer glycyrrhizin low producing strain27.777
DRR006524Root Summer glycyrrhizin low producing strain28.432
DRR006525Leaf Summer glycyrrhizin high producing strain82.481
DRR006526Leaf Summer glycyrrhizin high producing strain82.009

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.183
SRR2868004Drought Stress(Tissue:root)62.002
SRR2967015Control (Tissue:root)47.706

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave74.156
SRR9715740Leave87.249
SRR9715741Leave82.623
SRR9715739Root9.435
SRR9715742Root30.970
SRR9715743Root25.935

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.842
SRR8749028MeJA induced 9h27.478
SRR8749029MeJA induced 9h12.952
SRR8749030Uninduced13.368
SRR8749031Uninduced16.099
SRR8749032Uninduced7.187

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.704
SRR8400027Control-Root27.004

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved