Gene detail information of Glyur000001s00000195.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28300.1 | 4.00E-44 | Duplicated homeodomain-like superfamily protein |
| NR | XP_007144820.1 | 0 | hypothetical protein PHAVU_007G186700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8H181|GTL2_ARATH | 8.00E-97 | Trihelix transcription factor GTL2 |
| trEMBL | tr|V7BG15|V7BG15_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16814.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 1025958 | 1028710 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000195.1 | PF13837.1 | Myb_DNA-bind_4 | 110 | 196 | 1.10E-10 |
| Glyur000001s00000195.1 | PF13837.1 | Myb_DNA-bind_4 | 455 | 549 | 2.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.823 |
| SRR1783600 | control | 6.791 |
| SRR1783602 | moderate drought stress | 14.453 |
| SRR1811619 | moderate drought stress | 14.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.693 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.538 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.461 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.494 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.184 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.118 |
| SRR2967015 | Control (Tissue:root) | 14.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.114 |
| SRR9715740 | Leave | 11.216 |
| SRR9715741 | Leave | 7.829 |
| SRR9715739 | Root | 1.176 |
| SRR9715742 | Root | 7.002 |
| SRR9715743 | Root | 5.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.286 |
| SRR8749028 | MeJA induced 9h | 2.531 |
| SRR8749029 | MeJA induced 9h | 2.062 |
| SRR8749030 | Uninduced | 0.259 |
| SRR8749031 | Uninduced | 0.923 |
| SRR8749032 | Uninduced | 0.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.412 |
| SRR8400027 | Control-Root | 7.313 |