Gene detail information of Glyur000001s00000197.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04810.20NIMA-related kinase 2
NRXP_004495793.10PREDICTED: serine/threonine-protein kinase Nek1-like [Cicer arietinum]
COGYP_006527485.11.00E-21serine/threonine protein kinase with PASTA sensor(s) [Melioribacter roseus P3M-2]
Swissprottr|Q2QMH1|NEK2_ORYSJ0Serine/threonine-protein kinase Nek2
trEMBLtr|V7BH15|V7BH15_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW16815.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0000110404601047850+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.1.6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000197.1PF00069.20Pkinase1173444.90E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.963
SRR1783600control44.748
SRR1783602moderate drought stress29.312
SRR1811619moderate drought stress28.858

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.957
DRR006520Root Summer glycyrrhizin high producing strain16.777
DRR006521Root Winter glycyrrhizin high producing strain26.860
DRR006522Root Winter glycyrrhizin high producing strain26.251
DRR006523Root Summer glycyrrhizin low producing strain13.242
DRR006524Root Summer glycyrrhizin low producing strain13.175
DRR006525Leaf Summer glycyrrhizin high producing strain13.443
DRR006526Leaf Summer glycyrrhizin high producing strain13.501

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.684
SRR2868004Drought Stress(Tissue:root)21.355
SRR2967015Control (Tissue:root)23.365

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.370
SRR9715740Leave9.799
SRR9715741Leave6.096
SRR9715739Root8.515
SRR9715742Root15.075
SRR9715743Root12.791

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.111
SRR8749028MeJA induced 9h17.129
SRR8749029MeJA induced 9h25.030
SRR8749030Uninduced2.215
SRR8749031Uninduced1.044
SRR8749032Uninduced5.138

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.056
SRR8400027Control-Root46.101

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved