Gene detail information of Glyur000001s00000201.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G28840.20GDP-D-mannose 3',5'-epimerase
NRACM47361.10GDP-mannose-3',5'-epimerase [Caragana korshinskii]
COGYP_589972.12.00E-123NAD-dependent epimerase/dehydratase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q93VR3|GME_ARATH0GDP-mannose 3,5-epimerase
trEMBLtr|B9VU69|B9VU69_9FABA0GDP-mannose-3',5'-epimerase {ECO:0000313|EMBL:ACM47361.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0000110687831073067-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10046GME EC:5.1.3.18 5.1.3.- Ascorbate and aldarate metabolism map00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000201.1PF01370.16Epimerase302822.50E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control64.800
SRR1783600control64.924
SRR1783602moderate drought stress54.597
SRR1811619moderate drought stress54.708

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.733
DRR006520Root Summer glycyrrhizin high producing strain54.276
DRR006521Root Winter glycyrrhizin high producing strain37.015
DRR006522Root Winter glycyrrhizin high producing strain36.152
DRR006523Root Summer glycyrrhizin low producing strain38.861
DRR006524Root Summer glycyrrhizin low producing strain38.837
DRR006525Leaf Summer glycyrrhizin high producing strain91.393
DRR006526Leaf Summer glycyrrhizin high producing strain91.055

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.523
SRR2868004Drought Stress(Tissue:root)60.523
SRR2967015Control (Tissue:root)68.521

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.548
SRR9715740Leave75.159
SRR9715741Leave52.052
SRR9715739Root48.675
SRR9715742Root47.139
SRR9715743Root44.934

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.587
SRR8749028MeJA induced 9h14.905
SRR8749029MeJA induced 9h18.193
SRR8749030Uninduced5.372
SRR8749031Uninduced3.639
SRR8749032Uninduced4.787

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.499
SRR8400027Control-Root39.499

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved