Gene detail information of Glyur000002s00000209.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16910.1 | 4.00E-108 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | KEH44367.1 | 0 | transcription factor aborted microspores-like protein [Medicago truncatula] |
| Swissprot | tr|Q9ZVX2|AMS_ARATH | 1.00E-131 | Transcription factor ABORTED MICROSPORES |
| trEMBL | tr|A0A072VRJ5|A0A072VRJ5_MEDTR | 0 | Transcription factor aborted microspores-like protein {ECO:0000313|EMBL:KEH44367.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 3320 | 6131 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000209.1 | PF14215.1 | bHLH-MYC_N | 9 | 136 | 5.60E-11 |
| Glyur000002s00000209.1 | PF00010.21 | HLH | 303 | 347 | 1.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.697 |
| SRR1783600 | control | 0.668 |
| SRR1783602 | moderate drought stress | 0.660 |
| SRR1811619 | moderate drought stress | 0.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.038 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.694 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.068 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.222 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.249 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.528 |
| SRR2967015 | Control (Tissue:root) | 1.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.688 |
| SRR9715740 | Leave | 37.268 |
| SRR9715741 | Leave | 3.851 |
| SRR9715739 | Root | 3.585 |
| SRR9715742 | Root | 0.101 |
| SRR9715743 | Root | 0.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.343 |
| SRR8749028 | MeJA induced 9h | 0.669 |
| SRR8749029 | MeJA induced 9h | 0.194 |
| SRR8749030 | Uninduced | 0.437 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.672 |
| SRR8400027 | Control-Root | 1.280 |