Gene detail information of Glyur000002s00000213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 2.00E-13 | AP2/B3-like transcriptional factor family protein |
| NR | KHN11485.1 | 3.93E-110 | B3 domain-containing transcription factor VRN1 [Glycine soja] |
| Swissprot | tr|Q2QMT6|Y1208_ORYSJ | 3.00E-21 | B3 domain-containing protein LOC_Os12g40080 |
| trEMBL | tr|K7N2T3|K7N2T3_SOYBN | 3.00E-111 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24222.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 27640 | 29770 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000213.1 | PF02362.16 | B3 | 6 | 64 | 4.50E-08 |
| Glyur000002s00000213.1 | PF02362.16 | B3 | 210 | 295 | 7.80E-14 |
| Glyur000002s00000213.1 | PF02362.16 | B3 | 328 | 417 | 1.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.044 |
| SRR1783600 | control | 0.088 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.088 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.259 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.221 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.294 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.206 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.125 |
| SRR2967015 | Control (Tissue:root) | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.567 |
| SRR9715740 | Leave | 0.247 |
| SRR9715741 | Leave | 0.789 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 0.042 |
| SRR9715743 | Root | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.816 |
| SRR8749028 | MeJA induced 9h | 0.231 |
| SRR8749029 | MeJA induced 9h | 0.870 |
| SRR8749030 | Uninduced | 0.266 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.105 |
| SRR8400027 | Control-Root | 0.264 |