Gene detail information of Glyur000002s00000215.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33840.16.00E-157Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
NRXP_007156912.10hypothetical protein PHAVU_002G027700g [Phaseolus vulgaris]
COGYP_008797747.14.00E-85tyrosyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
trEMBLtr|V7CJ18|V7CJ18_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW28906.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000024516548647-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01866YARS, tyrS EC:6.1.1.1 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004831  tyrosine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000215.1PF00579.20tRNA-synt_1b643371.00E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control86.522
SRR1783600control87.121
SRR1783602moderate drought stress104.838
SRR1811619moderate drought stress104.966

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain128.091
DRR006520Root Summer glycyrrhizin high producing strain126.860
DRR006521Root Winter glycyrrhizin high producing strain152.528
DRR006522Root Winter glycyrrhizin high producing strain150.384
DRR006523Root Summer glycyrrhizin low producing strain100.196
DRR006524Root Summer glycyrrhizin low producing strain99.718
DRR006525Leaf Summer glycyrrhizin high producing strain53.504
DRR006526Leaf Summer glycyrrhizin high producing strain53.386

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)142.870
SRR2868004Drought Stress(Tissue:root)116.953
SRR2967015Control (Tissue:root)119.192

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave67.936
SRR9715740Leave69.996
SRR9715741Leave73.150
SRR9715739Root14.825
SRR9715742Root55.799
SRR9715743Root44.300

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h166.599
SRR8749028MeJA induced 9h129.301
SRR8749029MeJA induced 9h146.542
SRR8749030Uninduced98.603
SRR8749031Uninduced74.313
SRR8749032Uninduced87.438

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root109.172
SRR8400027Control-Root99.702

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved