Gene detail information of Glyur000002s00000216.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18990.1 | 5.00E-21 | AP2/B3-like transcriptional factor family protein |
| NR | XP_006606882.1 | 8.81E-117 | PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] |
| Swissprot | tr|Q851V5|Y3216_ORYSJ | 8.00E-35 | Putative B3 domain-containing protein Os03g0621600 |
| trEMBL | tr|G8A2Z4|G8A2Z4_MEDTR | 4.00E-98 | Reduced vernalization response {ECO:0000313|EMBL:AES85832.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 51555 | 61024 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000216.1 | PF02362.16 | B3 | 26 | 108 | 4.50E-11 |
| Glyur000002s00000216.1 | PF02362.16 | B3 | 188 | 277 | 2.60E-10 |
| Glyur000002s00000216.1 | PF02362.16 | B3 | 280 | 356 | 1.50E-09 |
| Glyur000002s00000216.1 | PF02362.16 | B3 | 512 | 585 | 1.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.003 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.007 |
| SRR1811619 | moderate drought stress | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.601 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.040 |
| SRR2967015 | Control (Tissue:root) | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.028 |
| SRR9715740 | Leave | 0.019 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.026 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.037 |
| SRR8400027 | Control-Root | 0.190 |