Gene detail information of Glyur000002s00000229.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02070.1 | 3.00E-75 | indeterminate(ID)-domain 5 |
| NR | KHN37412.1 | 0 | Zinc finger protein NUTCRACKER [Glycine soja] |
| Swissprot | tr|Q8GYC1|IDD4_ARATH | 5.00E-107 | Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor) |
| trEMBL | tr|K7N2T9|K7N2T9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24366.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 145115 | 149882 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000229.1 | PF00096.21 | zf-C2H2 | 56 | 78 | 0.0094 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.176 |
| SRR1783600 | control | 0.176 |
| SRR1783602 | moderate drought stress | 0.160 |
| SRR1811619 | moderate drought stress | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.958 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.960 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.155 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.016 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.049 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 66.916 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 66.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.708 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.741 |
| SRR2967015 | Control (Tissue:root) | 17.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 29.679 |
| SRR9715740 | Leave | 47.960 |
| SRR9715741 | Leave | 33.774 |
| SRR9715739 | Root | 0.010 |
| SRR9715742 | Root | 1.418 |
| SRR9715743 | Root | 1.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.137 |
| SRR8749030 | Uninduced | 0.053 |
| SRR8749031 | Uninduced | 0.002 |
| SRR8749032 | Uninduced | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.278 |
| SRR8400027 | Control-Root | 2.564 |