Gene detail information of Glyur000002s00000233.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54250.10GHMP kinase family protein
NRXP_004497159.10PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum]
COGYP_255884.16.00E-60diphosphomevalonate decarboxylase [Sulfolobus acidocaldarius DSM 639]
trEMBLtr|I1NFB9|I1NFB9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002172476177530+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01597MVD, mvaD EC:4.1.1.33 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0019287  isopentenyl diphosphate biosynthetic process, mevalonate pathway


cellular_component

GO:0005829  cytosol


molecular_function

GO:0004163  diphosphomevalonate decarboxylase activity

GO:0016831  carboxy-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.089
SRR1783600control42.491
SRR1783602moderate drought stress19.611
SRR1811619moderate drought stress19.534

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.893
DRR006520Root Summer glycyrrhizin high producing strain34.744
DRR006521Root Winter glycyrrhizin high producing strain6.203
DRR006522Root Winter glycyrrhizin high producing strain5.995
DRR006523Root Summer glycyrrhizin low producing strain10.783
DRR006524Root Summer glycyrrhizin low producing strain10.556
DRR006525Leaf Summer glycyrrhizin high producing strain7.280
DRR006526Leaf Summer glycyrrhizin high producing strain7.245

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)170.359
SRR2868004Drought Stress(Tissue:root)80.421
SRR2967015Control (Tissue:root)69.039

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.999
SRR9715740Leave11.453
SRR9715741Leave14.445
SRR9715739Root40.623
SRR9715742Root64.621
SRR9715743Root63.906

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.440
SRR8749028MeJA induced 9h12.876
SRR8749029MeJA induced 9h9.676
SRR8749030Uninduced6.509
SRR8749031Uninduced3.690
SRR8749032Uninduced3.234

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root71.520
SRR8400027Control-Root83.132

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved