Gene detail information of Glyur000002s00000236.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08415.18.00E-162Radical SAM superfamily protein
NRXP_003555873.10PREDICTED: lipoyl synthase, chloroplastic [Glycine max]
COGYP_002492509.13.00E-117lipoyl synthase [Anaeromyxobacter dehalogenans 2CP-1]
Swissprottr|B9RX57|LISC_RICCO0Lipoyl synthase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03129} (Precursor)
trEMBLtr|V7BAJ7|V7BAJ7_PHAVU0Lipoyl synthase, chloroplastic {ECO:0000256|HAMAP-Rule:MF_03129}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002184823188204-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03644lipA EC:2.8.1.8 Lipoic acid metabolism map00785


Gene Ontology

biological_process

GO:0009107  lipoate biosynthetic process


cellular_component

GO:0009507  chloroplast


molecular_function

GO:0003824  catalytic activity

GO:0016992  lipoate synthase activity

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000236.1PF04055.16Radical_SAM1302902.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.622
SRR1783600control6.484
SRR1783602moderate drought stress5.780
SRR1811619moderate drought stress5.785

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.505
DRR006520Root Summer glycyrrhizin high producing strain11.508
DRR006521Root Winter glycyrrhizin high producing strain10.542
DRR006522Root Winter glycyrrhizin high producing strain9.947
DRR006523Root Summer glycyrrhizin low producing strain10.523
DRR006524Root Summer glycyrrhizin low producing strain10.679
DRR006525Leaf Summer glycyrrhizin high producing strain12.961
DRR006526Leaf Summer glycyrrhizin high producing strain13.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.272
SRR2868004Drought Stress(Tissue:root)19.456
SRR2967015Control (Tissue:root)17.666

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.631
SRR9715740Leave11.360
SRR9715741Leave10.863
SRR9715739Root1.359
SRR9715742Root4.956
SRR9715743Root2.623

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.073
SRR8749028MeJA induced 9h15.622
SRR8749029MeJA induced 9h10.936
SRR8749030Uninduced8.219
SRR8749031Uninduced3.337
SRR8749032Uninduced3.422

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.768
SRR8400027Control-Root10.728

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved