Gene detail information of Glyur000002s00000250.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G25100.12.00E-113Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NRXP_003536702.11.41E-171PREDICTED: ribonuclease H2 subunit A isoform 1 [Glycine max]
COGYP_685601.12.00E-23ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Swissprottr|Q9SEZ6|RNH2A_ARATH6.00E-142Ribonuclease H2 subunit A
trEMBLtr|I1LF08|I1LF08_SOYBN5.00E-172Ribonuclease {ECO:0000256|RuleBase:RU003515}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002253085255690-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10743RNASEH2A EC:3.1.26.4 DNA replication map03030


Gene Ontology

biological_process

GO:0016070  RNA metabolic process


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004523  RNA-DNA hybrid ribonuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000250.1PF01351.13RNase_HII292044.20E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.519
SRR1783600control12.436
SRR1783602moderate drought stress14.385
SRR1811619moderate drought stress14.722

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.221
DRR006520Root Summer glycyrrhizin high producing strain16.110
DRR006521Root Winter glycyrrhizin high producing strain13.686
DRR006522Root Winter glycyrrhizin high producing strain14.166
DRR006523Root Summer glycyrrhizin low producing strain19.970
DRR006524Root Summer glycyrrhizin low producing strain19.794
DRR006525Leaf Summer glycyrrhizin high producing strain5.844
DRR006526Leaf Summer glycyrrhizin high producing strain5.530

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.310
SRR2868004Drought Stress(Tissue:root)19.327
SRR2967015Control (Tissue:root)21.566

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.083
SRR9715740Leave9.336
SRR9715741Leave8.012
SRR9715739Root5.852
SRR9715742Root9.271
SRR9715743Root9.785

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h50.060
SRR8749028MeJA induced 9h26.473
SRR8749029MeJA induced 9h29.967
SRR8749030Uninduced9.643
SRR8749031Uninduced5.642
SRR8749032Uninduced7.897

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.642
SRR8400027Control-Root29.671

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved