Gene detail information of Glyur000002s00000255.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12120.2 | 3.00E-161 | fatty acid desaturase 2 |
| NR | ABF84062.1 | 0 | microsomal oleate desaturase FAD2-1B [Glycine max] |
| COG | YP_007065848.1 | 3.00E-78 | Delta-15 acyl-phospholipid desaturase [Calothrix sp. PCC 7507] |
| Swissprot | tr|P48630|FD6E1_SOYBN | 0 | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 |
| trEMBL | tr|Q19AK8|Q19AK8_SOYBN | 0 | Microsomal oleate desaturase FAD2-1B {ECO:0000313|EMBL:ABF84062.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 294892 | 298160 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10256 | FAD2 | EC:1.14.19.6 1.14.19.22 | Fatty acid metabolism | map01212 |
| Biosynthesis of unsaturated fatty acids | map01040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000255.1 | PF00487.19 | FA_desaturase | 104 | 365 | 1.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.690 |
| SRR1783600 | control | 0.691 |
| SRR1783602 | moderate drought stress | 0.094 |
| SRR1811619 | moderate drought stress | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.178 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.993 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.843 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.059 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.089 |
| SRR2967015 | Control (Tissue:root) | 0.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.194 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.159 |
| SRR9715739 | Root | 0.162 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.055 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.063 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.621 |
| SRR8400027 | Control-Root | 3.504 |