Gene detail information of Glyur000002s00000269.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04310.12.00E-162Pectin lyase-like superfamily protein
NRXP_003555884.10PREDICTED: probable pectate lyase 12-like [Glycine max]
COGYP_001628843.11.00E-25hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
Swissprottr|Q9SCP2|PLY12_ARATH0Probable pectate lyase 12 (Precursor)
trEMBLtr|I1NFF3|I1NFF3_SOYBN0Pectate lyase {ECO:0000256|RuleBase:RU361123}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002403193409161+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01728pel EC:4.2.2.2 Pentose and glucuronate interconversions map00040
Quorum sensingmap02024


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000269.1PF00544.14Pec_lyase_C1433384.20E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.907
SRR1783600control26.974
SRR1783602moderate drought stress15.526
SRR1811619moderate drought stress15.676

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.742
DRR006520Root Summer glycyrrhizin high producing strain30.516
DRR006521Root Winter glycyrrhizin high producing strain0.201
DRR006522Root Winter glycyrrhizin high producing strain0.196
DRR006523Root Summer glycyrrhizin low producing strain12.870
DRR006524Root Summer glycyrrhizin low producing strain13.013
DRR006525Leaf Summer glycyrrhizin high producing strain2.596
DRR006526Leaf Summer glycyrrhizin high producing strain2.564

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.535
SRR2868004Drought Stress(Tissue:root)18.924
SRR2967015Control (Tissue:root)21.231

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.120
SRR9715740Leave0.800
SRR9715741Leave1.160
SRR9715739Root6.489
SRR9715742Root6.690
SRR9715743Root4.374

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.758
SRR8749028MeJA induced 9h1.760
SRR8749029MeJA induced 9h1.445
SRR8749030Uninduced0.057
SRR8749031Uninduced0.069
SRR8749032Uninduced0.180

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.944
SRR8400027Control-Root28.466

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved