Gene detail

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Gene detail information of Glyur000002s00000309.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68560.1	0	alpha-xylosidase 1
NR	XP_003536686.1	0	PREDICTED: alpha-xylosidase 1-like [Glycine max]
COG	YP_003705400.1	1.00E-89	alpha-glucosidase [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q9S7Y7\|XYL1_ARATH	0	Alpha-xylosidase 1 (Precursor)
trEMBL	tr\|I1LEX2\|I1LEX2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G42140.1}

Sequence

Transcript Sequence

>Glyur000002s00000309.1
ATGGTTTCACTTAGACCTTTACTTGCTCTGAGTCTGTCTTCTATTCTTCTAACTTGGCTTCTATGTATAGCTGAAGAAACCAGCTTTTCTTCCACAAAGGCCACCAAAATTGGCCAAGGCTACCGTCTCATATCTATTGAAGATGCCCCTGATGGTGCTCTAGTGGGGCTCCTCCAAGTTAAGCAGAAGAACAATATTTATGGTCCCGACATTCCCCTTTTACGCTTCTATGTCAAGCACGAGACACAGAACCGTTTGAGGGTACACATCACCGATGCAAAGAACCAAAGGTGGGAGGTTCCTTACAATCTTTTGCCCAGGGAGCAACCACCGGTTCTGAAGCAGAACATCAAGAGGTTGAGAAAGAACCCAATATCAGTGTCAGAGTACTCTGGCTCTGAGCTTGTCTTTAGCTACATTTCTGACCCATTTAGCTTTGCGGTGAAAAGGAAGTCCAATGGGGACACCCTATTTGACTCCAGCTCTAATGGGTCAGACCCATTTGGCCCATTGGTGTTCAAGGACCAGTACCTGGAAATCTCTACCAAATTGCCCGAAGATGCTTCTTTGTATGGCTTGGGAGAGAACACACAGCCCCACGGGATCAAACTGTACCCAAATGACCCTTACACTTTGTATACCACTGACATATCAGCCATTAATCTCAATGCTGATCTATATGGGTCACACCCTGTATACATGGATCTCAGAAATGATGGTGGCAAAGCTTATGCACACGGTGTTCTGTTGCTGAATAGCAATGGGATGGATGTGTTCTACAAAGGGACCTCTCTGACATACAAGATCATTGGAGGGGTGCTTGACTTTTTACTTCTTTGCTGGGCCCACACCTCTGAACGGAGACCTGCTCCAATGCCTTACTGGGCTTTTGGATTCCACCAATGTAGATGGGGATATCACAACCTATCTGTTGTAGAAGATGTTGTTGAGAATTACAAGAAGGCCAAAATCCCACTTGATGTGATATGGAACGATGATGATCACATGGATGACCACAAGGACTTCACACTCAATCCAATTAACTATCCTCGTCCNAAGCTTCTAGCTTTTCTGGAAAGAATACACAACATTGGCATGAAATACATTGTCATCATTGATCCCGGAATCGCTGTTAACTCCAGCTATGGTGTGTATACGAGGGGAATGGCTAATGATGTTTTTATCAAGTATGAAGGTGAACCCTTCATGGCTCAAGTTTGGCCAGGAGCAGTGTACTTCCCTGATTTTCTCAATCCAAAAACAGTTTCTTGGTGGGGTGATGAGATTCGCCGCTTCCATGAACTTGTACCCGTTGATGGCCTATGGATTGACATGAATGAGGTTTCAAATTTCTGCACTGGAAAATGCACACTTTCAAAGGGAAGGGAGTGCCCAATTACGAGTGGAAAAGGACCAGATGCTACATGTTGCTTAGATTGCAAAAACATCACAAGCACAAGATGGGACGACCCTCCTTACAAAATCAATGCTTCAGGAGTACATGCTCCTATAGGCTTCAAAACCATAGCCACAAGTGCAGTTCATTATAATAATGTTTTGGAATATGATGCTCACAGCCTTTTTGGTTTCTCTCAGGCCATTGCAACTCAAAAGGNCCTTCAGGGTCTTCAAGGAAAACGACCATTTGTTTTGTCTCGTTCCACTTATGTGGGATCAGGCAAATATGCTGCACATTGGACTGGTGACAACAAGGGTACATGGGAGGATTTGAGATACTCAATATCTACGGTGCTCAATTTTGGAATATTTGGGGTGCCAATGGTTGGTGCTGATATATGTGGTTTCTATCCAGCACCTACTGAAGAGCTTTGTAATAGGTGGATTGAAGTTGGTGCTTTCTATCCTTTGTCAAGGGACCATTCAAGCTGGATCAACGCTAGACAGGAACTTTACCAATGGGAGTCAGTAGCTGAGTCAGCAAGAAATGCTTTGGGTATGAGGTATAAGCTCCTCCCATATCTCTACACCCTNAACTATGAGGCTCATATTAGTGGTGCCCCAATTGCAAGGCCTCTTTTCTTCTCATTTCCAACTTATGCTGAATGTTATGGCCTTAGCACCCAGTTTTTACTTGGAAGTAGCCTCATGATTTCACCTGTTCTTGAGCAAGGAAAAACTGAAGTTAAAGCACTCTTTCCTCCAGGAACCTGGTACAGTTTGTTTGATTTGACTCAAGCCATTGTTTCGAAAGATGGAACCTATGTTACCCTTGATGCTCCTCTGCATGTGGTCAATGTGCACTTGTATCAGAATACCATTCTTCCAATGCAACAGGGTGGAATGATAACTAAGGATGCTAGAATGACACCCTTCAGTCTTGTTGTGACCTTCCCAGCNGGTGCAACTGAAGGAGAAGCTAAAGGGAATCTATTCCTTGATGATGATGAGGTGCCAGAAATGAAGCTTGGAAATGGCTATTCAACTTACATTGATTTCCATGCAACTGTCAAAGAAGGAACTGTGAAAGTTTGGTCACAAGTCCAAGAGGGCAAGTTTGCTTTGGATAAAGGTTGGGTAATTGACACAATTAATGTGTTGGGATTAAATGGAAGTGGAGCACAGGCTACAATTGAGATAGATGGAGAACCATCAAATTTGGAAGTTAGTACATCNGAACACCAGTACTTGTATGGGCAGGGAGATGGAGAAAAGAAGACAGTGATGGTAGGATTGAAGGGATTGAATATCCCTGTAGCTGAAGAAGCTACTTCTTCTTCTCCCAAGGCCACCAAAATTGGCCAAGGCTACCGTCTCATATCCATTGAAGATACCCCTGATGGTGCCATCACGGGGCTCCTCCAAGTTAAGCAGAAGAACGATATCTATGGTCCTGACATTCCCCTTTTACGCTTCTATGTCAAGCACGAGACTGAGAACCGTTTGAGGGTACACATCACCGATGCAAAGAACCAAAGGTGGGAGGTTCCTTACAATCTTTTGCCCAGGGAGCAACCACCGGCNTTGAAGCAGAACATCAAGAGGTTGAGAAAGAACCCATTATCAGTGTCAGAATACTCAAGCTCTGAGCTTGTCTTTAGCTACATTTCTGACCCATTTAGCTTTGCNGTGAAAAGGAAGTCCAATGGGGACATCCTATTTGACTCCAGCTCTACTGAGTCAGACCCATTTGGCCCATTGGTCTTCAAGGACCAGTACCTTGAAATCTCTACAAAACTGCCCAAAGATGCCTCTTTGTATGGTTTGGGAGAGAACACACAGCCTCATGGGATCAAACTGTACCCAAATGACCCTTACACTTTGTATACCACTGACATATCAGCCATTAATCTCAATGCTGATCTATATGGGTCACACCCTGTATACATGGATCTCAGAAACGAAGGTGGCAAAGCTTATGCACACGGTGTTCTGTTGCTGAATAGCAATGGGATGGATGTGTTCTACAAAGGAATCTCTCTGACATACAAGATTATTGGTGGGGTGCTTGATTTTTACTTCTTTGCAGGACCCACTCCTTTGAATGTTGTTGATCAGTACACTTCCTTCATCGGTAGACCAGCTCCAATGCCTTACTGGGCTTTCGGATTCCACCAATGCAGATGGGGATATCACAACCTATCTGTTGTTGAAGATGTTGTCGAGAATTACAAGAAGGCCAAAATCCCACTTGATGTGATCTGGAATGATGACGATCACATGGATGGACACAAGGACTTTACACTCAATCCAATTAGCTACCCTCGTCCGAAGCTTTTAGACTTTCTGGACAGAATACACAGCATTGGCATGAAATACATTGTCATCATTGATCCTGGTATTGCTGTTAACTCCAGCTATGGTGTGTATCAGAGGGGTATGGCTAATGATGTCTTTATCAAGTATGAGGGTGAACCCTTCTTGGCTCAAGTTTGGCCAGGAGCAGTGTACTTNCCTGATTTTCTCAATCCAAAAACAGTTTCTTGGTGGGGTGATGAGATACGCCGCTTCCATGAACTTGTCCCCGTTGATGGCCTATGGATTGACATGAATGAAGCTTCAAATTTCTGCTCTGGGAAGTGCACAATTCCTAAAGGAAAGGTGTGCCCAAGTGGAACAGGACCTGGGTGGGTATGTTGCTTAGATTGCAAAAACATCACAAGCACACGATGGGATGATCCACCCTATAAAATTAATGCTTCAGGAGTACAGGCTCCTATAGGCTTTAAGACTATAGCCACTAGTGCGGTTCACTATAATGGCGTTTTGGAGTATGATGCTCACAGTATTTATGGTTTTTCTCAAGCCATTGCAACTCACAAGGCCCTTCAGGGGCTTCAAGGAAAACGGCCTTTTATTTTGTCCCGCTCCACTTATGTGGGTTCAGGCAAGTATGCTGCACATTGGACCGGTGACAATAAGGGCACATGGGAGGACTTGAGATACTCAATATCTACGATGCTCAACTTTGGAATATTTGGGGTGCCAATGGTTGGTTCAGACATATGTGGTTTCTATCCAGCACCCACTGAAGAACTTTGCAATCGGTGGATTGAAGTTGGTGCTTTCTACCCTTTCTCAAGGGACCATGCAAACTTCTACTCCCCTAGACAGGAACTTTACCAATGGGACTCAGTAGCTGAGTCGGCTCGAAATGCTTTAGGTATGAGGTATAAGCTCCTCCCATATCTGTACACCCTGAGCTATGAGGCTCATCTTAGTGNAGCCCCAATTGCCAGGCCACTTTTCTTCTCATTTCCAACTTATGTTGAATGCTATGGCCTCAGCACCCAGTTCTTACTTGGAAGCAGCCTAATGATTTCTCCTGTGCTTGAGCAAGGCAAAACAGAAGTTAAAGCACTCTTCCCTCCTGGAACCTGGTACAGTTTGTCTGATTTGACGCATACCATTGTATCGAAAGATGGAACCTATGTTACCCTTGATGCGCCTCTGCATGTGGTCAATGTGCACTTGTATCAGAATACCATTCTTCCAATGCAACAGGGTGGAATGATATCTAAGGATGCTAGAATGACACCCTTTAGCCTCACCGTGACCTTCCCAGCAGGTGCACCTGAAGGAGAAGCTAAAGGGAACCTATTCCTTGATGATGATGAGCTTCCAGAAATGAAGCTTGGAAATGGCTATTCAACTTACATTGATTTNCATGCAACCGTCAAAGATGGAACTGTGAAAGTTTGGTCACAAGTCCAAGAAGGCAAGTTTGCTTTGGATAAAGGTTGGCTCATTGACACAATAAATGTGTTGGGATTAAATGGAAGTGGAGCACAGGCTACAATTGAGATAGATGGAGAACCACCNATGGGTGTCTCAAATGTGACAGTTAGTACATCTGAACACAAGTACTTGTACGGGCAAGGAGATGGAGAAACAAAGACAGTGATGGTAGGATTGAAGGGCTTGAATATCCCTGTAGGTAAAAATTTTGCCATGACCTGGAAGATGGGATCATAAGTTGAGACTATCTCATCTTAATTGGGACTTTGTAACTTTATTATTTCTCTTATGTTTTCTAATAATTCTTATTAGCGTTGTAGAGGGAGAGGAGATGAGCTAGAATTAAGCTCGTCCTCTTCTATTTATACGAAGAGGATTACGGGTTAAGATTATGTTTAGTCTTTGAAATGCTTGAATTCAAATTTCGTTCTGCCTTTGTTGCCCATAT

Protein Sequence

>Glyur000002s00000309.1
MVSLRPLLALSLSSILLTWLLCIAEETSFSSTKATKIGQGYRLISIEDAPDGALVGLLQVKQKNNIYGPDIPLLRFYVKHETQNRLRVHITDAKNQRWEVPYNLLPREQPPVLKQNIKRLRKNPISVSEYSGSELVFSYISDPFSFAVKRKSNGDTLFDSSSNGSDPFGPLVFKDQYLEISTKLPEDASLYGLGENTQPHGIKLYPNDPYTLYTTDISAINLNADLYGSHPVYMDLRNDGGKAYAHGVLLLNSNGMDVFYKGTSLTYKIIGGVLDFLLLCWAHTSERRPAPMPYWAFGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDDHKDFTLNPINYPRPKLLAFLERIHNIGMKYIVIIDPGIAVNSSYGVYTRGMANDVFIKYEGEPFMAQVWPGAVYFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEVSNFCTGKCTLSKGRECPITSGKGPDATCCLDCKNITSTRWDDPPYKINASGVHAPIGFKTIATSAVHYNNVLEYDAHSLFGFSQAIATQKXLQGLQGKRPFVLSRSTYVGSGKYAAHWTGDNKGTWEDLRYSISTVLNFGIFGVPMVGADICGFYPAPTEELCNRWIEVGAFYPLSRDHSSWINARQELYQWESVAESARNALGMRYKLLPYLYTLNYEAHISGAPIARPLFFSFPTYAECYGLSTQFLLGSSLMISPVLEQGKTEVKALFPPGTWYSLFDLTQAIVSKDGTYVTLDAPLHVVNVHLYQNTILPMQQGGMITKDARMTPFSLVVTFPAGATEGEAKGNLFLDDDEVPEMKLGNGYSTYIDFHATVKEGTVKVWSQVQEGKFALDKGWVIDTINVLGLNGSGAQATIEIDGEPSNLEVSTSEHQYLYGQGDGEKKTVMVGLKGLNIPVAEEATSSSPKATKIGQGYRLISIEDTPDGAITGLLQVKQKNDIYGPDIPLLRFYVKHETENRLRVHITDAKNQRWEVPYNLLPREQPPALKQNIKRLRKNPLSVSEYSSSELVFSYISDPFSFAVKRKSNGDILFDSSSTESDPFGPLVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDISAINLNADLYGSHPVYMDLRNEGGKAYAHGVLLLNSNGMDVFYKGISLTYKIIGGVLDFYFFAGPTPLNVVDQYTSFIGRPAPMPYWAFGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDGHKDFTLNPISYPRPKLLDFLDRIHSIGMKYIVIIDPGIAVNSSYGVYQRGMANDVFIKYEGEPFLAQVWPGAVYXPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEASNFCSGKCTIPKGKVCPSGTGPGWVCCLDCKNITSTRWDDPPYKINASGVQAPIGFKTIATSAVHYNGVLEYDAHSIYGFSQAIATHKALQGLQGKRPFILSRSTYVGSGKYAAHWTGDNKGTWEDLRYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANFYSPRQELYQWDSVAESARNALGMRYKLLPYLYTLSYEAHLSXAPIARPLFFSFPTYVECYGLSTQFLLGSSLMISPVLEQGKTEVKALFPPGTWYSLSDLTHTIVSKDGTYVTLDAPLHVVNVHLYQNTILPMQQGGMISKDARMTPFSLTVTFPAGAPEGEAKGNLFLDDDELPEMKLGNGYSTYIDXHATVKDGTVKVWSQVQEGKFALDKGWLIDTINVLGLNGSGAQATIEIDGEPPMGVSNVTVSTSEHKYLYGQGDGETKTVMVGLKGLNIPVGKNFAMTWKMGS

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00002	581528	596055	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000002s00000309.1	PF01055.21	Glyco_hydro_31	288	761	5.90E-159
Glyur000002s00000309.1	PF01055.21	Glyco_hydro_31	1159	1650	2.10E-167

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.145
SRR1783600	control	6.202
SRR1783602	moderate drought stress	2.377
SRR1811619	moderate drought stress	2.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.053
DRR006520	Root Summer glycyrrhizin high producing strain	6.923
DRR006521	Root Winter glycyrrhizin high producing strain	1.289
DRR006522	Root Winter glycyrrhizin high producing strain	1.262
DRR006523	Root Summer glycyrrhizin low producing strain	3.874
DRR006524	Root Summer glycyrrhizin low producing strain	3.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.135
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.154

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.356
SRR2868004	Drought Stress(Tissue:root)	11.818
SRR2967015	Control (Tissue:root)	19.158

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.494
SRR9715740	Leave	0.153
SRR9715741	Leave	0.685
SRR9715739	Root	2.182
SRR9715742	Root	1.237
SRR9715743	Root	1.307

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.414
SRR8749028	MeJA induced 9h	0.142
SRR8749029	MeJA induced 9h	0.155
SRR8749030	Uninduced	0.011
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.734
SRR8400027	Control-Root	10.243