Gene detail information of Glyur000002s00000312.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68530.1 | 0 | 3-ketoacyl-CoA synthase 6 |
| NR | ACZ51240.1 | 0 | 3-ketoacyl-CoA synthase [Arachis hypogaea] |
| COG | YP_001103493.1 | 2.00E-20 | type III polyketide synthase [Saccharopolyspora erythraea NRRL 2338] |
| Swissprot | tr|Q9XF43|KCS6_ARATH | 0 | 3-ketoacyl-CoA synthase 6 |
| trEMBL | tr|I1E3D2|I1E3D2_ARAHY | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 628441 | 629931 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15397 | KCS | EC:2.3.1.199 | Fatty acid elongation | map00062 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000312.1 | PF08392.7 | FAE1_CUT1_RppA | 80 | 368 | 8.50E-141 |
| Glyur000002s00000312.1 | PF08541.5 | ACP_syn_III_C | 384 | 466 | 1.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.049 |
| SRR1783600 | control | 0.035 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 96.499 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 95.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.004 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 61.891 |
| SRR9715740 | Leave | 45.250 |
| SRR9715741 | Leave | 32.098 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 5.402 |
| SRR9715743 | Root | 3.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.028 |
| SRR8400027 | Control-Root | 5.194 |