Gene detail information of Glyur000002s00000315.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G25440.1 | 4.00E-60 | B-box type zinc finger protein with CCT domain |
NR | XP_004497095.1 | 3.61E-153 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Cicer arietinum] |
Swissprot | tr|Q8RWD0|COL16_ARATH | 2.00E-72 | Zinc finger protein CONSTANS-LIKE 16 |
trEMBL | tr|A0A072VQB9|A0A072VQB9_MEDTR | 8.00E-146 | Zinc finger constans-like protein {ECO:0000313|EMBL:KEH44219.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00002 | 653671 | 656068 | + |
Gene family
Gene family | subfamily |
---|---|
Transcription Factors Family | Orphans |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000002s00000315.1 | PF00643.19 | zf-B_box | 16 | 59 | 8.10E-07 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.404 |
SRR1783600 | control | 0.365 |
SRR1783602 | moderate drought stress | 0.556 |
SRR1811619 | moderate drought stress | 0.576 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 2.664 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 2.471 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.893 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.836 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 12.875 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 13.110 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.982 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.493 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 1.319 |
SRR2868004 | Drought Stress(Tissue:root) | 1.050 |
SRR2967015 | Control (Tissue:root) | 1.519 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 9.650 |
SRR9715740 | Leave | 3.566 |
SRR9715741 | Leave | 9.457 |
SRR9715739 | Root | 0.949 |
SRR9715742 | Root | 1.530 |
SRR9715743 | Root | 1.175 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 39.888 |
SRR8749028 | MeJA induced 9h | 52.412 |
SRR8749029 | MeJA induced 9h | 66.495 |
SRR8749030 | Uninduced | 50.181 |
SRR8749031 | Uninduced | 25.768 |
SRR8749032 | Uninduced | 25.690 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 2.925 |
SRR8400027 | Control-Root | 2.856 |