Gene detail information of Glyur000002s00000315.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G25440.14.00E-60B-box type zinc finger protein with CCT domain
NRXP_004497095.13.61E-153PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Cicer arietinum]
Swissprottr|Q8RWD0|COL16_ARATH2.00E-72Zinc finger protein CONSTANS-LIKE 16
trEMBLtr|A0A072VQB9|A0A072VQB9_MEDTR8.00E-146Zinc finger constans-like protein {ECO:0000313|EMBL:KEH44219.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002653671656068+


Gene family

Gene familysubfamily
Transcription Factors FamilyOrphans


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000315.1PF00643.19zf-B_box16598.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.404
SRR1783600control0.365
SRR1783602moderate drought stress0.556
SRR1811619moderate drought stress0.576

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.664
DRR006520Root Summer glycyrrhizin high producing strain2.471
DRR006521Root Winter glycyrrhizin high producing strain1.893
DRR006522Root Winter glycyrrhizin high producing strain1.836
DRR006523Root Summer glycyrrhizin low producing strain12.875
DRR006524Root Summer glycyrrhizin low producing strain13.110
DRR006525Leaf Summer glycyrrhizin high producing strain18.982
DRR006526Leaf Summer glycyrrhizin high producing strain19.493

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.319
SRR2868004Drought Stress(Tissue:root)1.050
SRR2967015Control (Tissue:root)1.519

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.650
SRR9715740Leave3.566
SRR9715741Leave9.457
SRR9715739Root0.949
SRR9715742Root1.530
SRR9715743Root1.175

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.888
SRR8749028MeJA induced 9h52.412
SRR8749029MeJA induced 9h66.495
SRR8749030Uninduced50.181
SRR8749031Uninduced25.768
SRR8749032Uninduced25.690

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.925
SRR8400027Control-Root2.856