Gene detail information of Glyur000002s00000316.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68510.1 | 6.00E-49 | LOB domain-containing protein 42 |
| NR | XP_003555233.1 | 5.30E-110 | PREDICTED: LOB domain-containing protein 40-like [Glycine max] |
| Swissprot | tr|Q9CA30|LBD42_ARATH | 1.00E-59 | LOB domain-containing protein 42 |
| trEMBL | tr|I1NFI9|I1NFI9_SOYBN | 2.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 658187 | 659700 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000316.1 | PF03195.9 | DUF260 | 4 | 108 | 2.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.353 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.831 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.589 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.652 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.187 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.221 |
| SRR9715740 | Leave | 0.819 |
| SRR9715741 | Leave | 3.718 |
| SRR9715739 | Root | 0.841 |
| SRR9715742 | Root | 0.519 |
| SRR9715743 | Root | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.827 |
| SRR8749028 | MeJA induced 9h | 98.927 |
| SRR8749029 | MeJA induced 9h | 65.981 |
| SRR8749030 | Uninduced | 30.631 |
| SRR8749031 | Uninduced | 13.243 |
| SRR8749032 | Uninduced | 15.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.378 |
| SRR8400027 | Control-Root | 0.581 |