Gene detail information of Glyur000002s00000324.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68480.1 | 5.00E-22 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | KEH44209.1 | 1.55E-114 | zinc finger protein, putative [Medicago truncatula] |
| Swissprot | tr|Q6S591|JAG_ARATH | 6.00E-36 | Zinc finger protein JAGGED |
| trEMBL | tr|A0A072VQB0|A0A072VQB0_MEDTR | 6.00E-115 | Zinc finger protein, putative {ECO:0000313|EMBL:KEH44209.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 718021 | 727417 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000324.1 | PF13912.1 | zf-C2H2_6 | 45 | 66 | 0.0045 |
| Glyur000002s00000324.1 | PF13912.1 | zf-C2H2_6 | 375 | 396 | 0.004 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.281 |
| SRR1783600 | control | 0.321 |
| SRR1783602 | moderate drought stress | 1.394 |
| SRR1811619 | moderate drought stress | 1.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.199 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.051 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.353 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.545 |
| SRR2967015 | Control (Tissue:root) | 0.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.128 |
| SRR9715741 | Leave | 0.034 |
| SRR9715739 | Root | 0.025 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.021 |
| SRR8749028 | MeJA induced 9h | 0.101 |
| SRR8749029 | MeJA induced 9h | 0.036 |
| SRR8749030 | Uninduced | 0.069 |
| SRR8749031 | Uninduced | 0.026 |
| SRR8749032 | Uninduced | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.059 |
| SRR8400027 | Control-Root | 0.030 |