Gene detail information of Glyur000002s00000343.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G25350.10glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative
NRKHN11406.10Glutamine--tRNA ligase [Glycine soja]
COGYP_004339565.16.00E-166glutaminyl-tRNA synthetase [Hippea maritima DSM 10411]
Swissprottr|P52780|SYQ_LUPLU0Glutamine--tRNA ligase
trEMBLtr|I1LEV4|I1LEV4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G41920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002822221829206-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01886QARS, glnS EC:6.1.1.18 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006412  translation

GO:0006418  tRNA aminoacylation for protein translation

GO:0006425  glutaminyl-tRNA aminoacylation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004819  glutamine-tRNA ligase activity

GO:0005524  ATP binding

GO:0016876  ligase activity, forming aminoacyl-tRNA and related compounds

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000343.1PF04558.10tRNA_synt_1c_R1101711.00E-57
Glyur000002s00000343.1PF04557.10tRNA_synt_1c_R21732392.20E-05
Glyur000002s00000343.1PF00749.16tRNA-synt_1c2715763.70E-118
Glyur000002s00000343.1PF03950.13tRNA-synt_1c_C5797708.00E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.270
SRR1783600control29.376
SRR1783602moderate drought stress23.166
SRR1811619moderate drought stress23.062

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.237
DRR006520Root Summer glycyrrhizin high producing strain40.061
DRR006521Root Winter glycyrrhizin high producing strain26.532
DRR006522Root Winter glycyrrhizin high producing strain25.681
DRR006523Root Summer glycyrrhizin low producing strain40.595
DRR006524Root Summer glycyrrhizin low producing strain40.391
DRR006525Leaf Summer glycyrrhizin high producing strain33.209
DRR006526Leaf Summer glycyrrhizin high producing strain33.017

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.475
SRR2868004Drought Stress(Tissue:root)49.377
SRR2967015Control (Tissue:root)46.867

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.002
SRR9715740Leave32.236
SRR9715741Leave31.243
SRR9715739Root4.366
SRR9715742Root32.124
SRR9715743Root26.373

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.866
SRR8749028MeJA induced 9h43.784
SRR8749029MeJA induced 9h31.122
SRR8749030Uninduced15.004
SRR8749031Uninduced10.744
SRR8749032Uninduced10.802

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.188
SRR8400027Control-Root38.546

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved