Gene detail information of Glyur000002s00000350.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G38830.10Cysteinyl-tRNA synthetase, class Ia family protein
NRXP_006589683.10PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Glycine max]
COGYP_004625616.12.00E-158cysteinyl-tRNA synthetase [Thermodesulfatator indicus DSM 15286]
trEMBLtr|V7BEM4|V7BEM4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW14926.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002859612864231+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01883CARS, cysS EC:6.1.1.16 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006423  cysteinyl-tRNA aminoacylation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004817  cysteine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000350.1PF01406.14tRNA-synt_1e223171.70E-125


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.685
SRR1783600control38.951
SRR1783602moderate drought stress33.868
SRR1811619moderate drought stress33.609

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.543
DRR006520Root Summer glycyrrhizin high producing strain54.962
DRR006521Root Winter glycyrrhizin high producing strain41.770
DRR006522Root Winter glycyrrhizin high producing strain40.361
DRR006523Root Summer glycyrrhizin low producing strain43.568
DRR006524Root Summer glycyrrhizin low producing strain44.162
DRR006525Leaf Summer glycyrrhizin high producing strain30.546
DRR006526Leaf Summer glycyrrhizin high producing strain30.592

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)75.381
SRR2868004Drought Stress(Tissue:root)65.527
SRR2967015Control (Tissue:root)60.667

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.774
SRR9715740Leave39.853
SRR9715741Leave47.997
SRR9715739Root9.039
SRR9715742Root31.056
SRR9715743Root29.638

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.801
SRR8749028MeJA induced 9h51.992
SRR8749029MeJA induced 9h46.197
SRR8749030Uninduced35.202
SRR8749031Uninduced20.335
SRR8749032Uninduced19.730

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.284
SRR8400027Control-Root53.937

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved