Gene detail information of Glyur000002s00000358.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68390.1 | 2.00E-112 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_004497066.1 | 0 | PREDICTED: uncharacterized protein LOC101490811 [Cicer arietinum] |
| trEMBL | tr|A0A072W1N5|A0A072W1N5_MEDTR | 0 | Core-2/I-branching enzyme {ECO:0000313|EMBL:KEH44200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00002 | 903882 | 908717 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000002s00000358.1 | PF02485.16 | Branch | 132 | 359 | 2.80E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.347 |
| SRR1783600 | control | 1.284 |
| SRR1783602 | moderate drought stress | 1.205 |
| SRR1811619 | moderate drought stress | 1.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.672 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.637 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.486 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.441 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.325 |
| SRR2967015 | Control (Tissue:root) | 5.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 36.439 |
| SRR9715740 | Leave | 30.384 |
| SRR9715741 | Leave | 50.318 |
| SRR9715739 | Root | 15.790 |
| SRR9715742 | Root | 22.473 |
| SRR9715743 | Root | 21.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.446 |
| SRR8749028 | MeJA induced 9h | 66.312 |
| SRR8749029 | MeJA induced 9h | 106.624 |
| SRR8749030 | Uninduced | 65.684 |
| SRR8749031 | Uninduced | 131.628 |
| SRR8749032 | Uninduced | 119.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.578 |
| SRR8400027 | Control-Root | 6.208 |