Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000003s00001132.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73370.1	sucrose synthase 6
NR	XP_004515259.1	PREDICTED: sucrose synthase 6-like isoform X2 [Cicer arietinum]
COG	YP_003529337.1	sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q9FX32\|SUS6_ARATH	Sucrose synthase 6
trEMBL	tr\|I1MQL2\|I1MQL2_SOYBN	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}

Sequence

Transcript Sequence

>Glyur000003s00001132.1
GAATTGCTCTTTCTTTTCTTGTTTCAAAGTTATTGGCTTATTGCAACTGTCCCTCAAATGGCTTCTACATCAANTTCAACCTTGAAGAGATCAGATTCAATTGCAGATAGCATGCCAGATGCATTGAGGCANAGCCGGTTCCATATGAAGAAATGCTTTGCCAGATTTGTTGCAAGTGGGAAAAGGTTAATGAAACAGAATCATATAATGGAGGATGTGGAGAAAACAGTTGAAGACAAAGATGAGAGGAAAAAGCTTCTAGAGGGCTTGTTGGCTGTTGTTCCACCATATGTTGCTTTTGCAGTCAGGCCTAATCCTGGCTTTTGGGAATTTGTCAAAGTGAATGCAGATGATTTGCAAGTAGATGGTATTGAGGCTTCAGAATACTTGAAATACAAGGAAATGGTGTTTGATGAGAAGGCAAATGATGAAAATGCTTTGGAGATAGATTTTGAGGCTATTGATTTCTCCACCCCTCGCATGGCTCTTTCTTCTTCTATTGGAAATGGATTAAACTTCACCACCAAGATCTTGACCTCAAGGTTGAGTGAGAGCTCACATTGTGCAAATCCATTGCTTGATTACTTATTGAGCCTTAATCATCAAGGAGAGAATCTTATGATCAAAGACACTTTGAATACCATACCAAAGCTTCAGAAAGCACTAAAAATAGCAGAAGCATATGTATCTGCACACCANAAAGACACACCATACCAGAATTTTGAAAGCAGGTTCAGAGAATGGGGATTTGATAAAGGGTGGGGAAATACAGCAGGAAGGATTAAAGAGACAATGAAAATGCTTTCTGAGGTATTAGAAGCAGCAGACCCAGTGAAATTGGAATCACTTTTCAGCAGGCTTCCAAACATGTTCAACATTGTTATTTTCTCTATTCATGGGTACTTTGGCCAAGCAGATGTCCTAGGATTACCAGATACTGGAGGCCAGGTGGTATATATTCTTGATCAAGTAAGGGCATTAGAGGAGGAGTTACTCCATAAGATTGAGCTGCAAGGTCTTAATGTGAAGCCACAAATTCTTGTGGTTACTCGTTTGATACCAGATGCTAGAAGGACCACTTGTAACCAAGAACTAGAACCTATCATCAACACTAAGCACTCCCACATTCTCAGGGTCCCTTTCTTGGCAGAGAATGGAATTCTTCACCAATGGGATGCTTCTACCAAGATTCTTGAACTCATGGAAGGGAAGCCTGACCTCATTATTGGAAATTATACAGATGGAAACTTGGTGTCATCCTTAATGGCTTCTAAACTTGGTGTAACTCAGGCAACCATTGCTCATGCTTTGGAGAAGACCAAGTATGAGGATTCAGATGTGAAATGGAATAACTTTGATGAAAAGTACCACTTTTCAAGTCAGTTCACAGCTGACATAATATCAATGAATTCAGCTGATTTCATCATAACTAGCACATACCAAGAAATTGCTGGAAGCAAGGATAGGCCAGGACAGTATGAAACCCACACTGCATTCACCATGCCCGGACTTTGCCGCGTAGTCTCAGGCATCAATGTGTTTGATCCAAAGTTCAATATTGCTGCTCCTGGAGCTGATCAATCTGTCTACTTCCCTTTCACAGAGAGAAAGCAAAGATTGACCAAATTTCACCCTACCATTGAGGAACTACTTTATAACAAGAAGAAACCAATCATCTTCTCCATGGCTAGGCTTGACAAAGTGAAGAACCTTAGTGGACTAGTTGAGTGGTATGCAAAGAACAAGAGGCTGAGGAGTTTGGTGAATCTTGTGGTTGTTGGAGGCTTCTTCAACCCTTCCAAATCCAAGGACAGGGAAGAAACTGATGAGATCAAGAAGATGCATTTCTTNATGAAGGAGTACAAACTCCAGGGTCAGTTCAGATGGATCGCTGCGCAAACCGATCGATATCGCAACGGAGAGCTGTACCGCTGCATCGCGGATACAAAAGGAGCTTTCGTGCAACCGGCATTGTATGAGGCTTTTGGTCTCACAGTCATTGAGGCAATGAACTGTGGATTACCAACTTTTGCAACAAATCAAGGAGGGCCAGCAGAAATCATAGTTGATGGAATCTCGGGTTTTCATATTGATCCCCACAATGGAGATGAATCAAGCAACAAGATTGCTGCCTTCTTTGAGAAGTGCAAGACTGATCCTGAACATTGGAATAGAATGTCAAAAGCCGGTCTTCAACGTATCAATGAATGCTATACATGGAAGATATATGCAAACAAAGTGTTGAATATGGGATCAATTTATGGGTTTTGGAGAAGGCAGAACAAGGAGCAAAAGTTGGCAAAGGATAGATACATCCAAATAAAGGTACCCATTCCTAGTGAGGTGCCCCAGGAAACTCAACCAATGTCAAAAACTCCAGCTAAAAGACCAGCAGCAGAAGCAAAACCTACTCCCAAGGATTTGAGGCATGATGCAACACCTCAAACCCAATTAACAGCACCACCACACAAAACTGAACATCAGCAAACCCCAAGGGATGAAGCTTCAAGTCAGGGACTAGCTGCTTCTATAGAAAGTGGTGGTGTTTTCTTTGGATTACGTTGGTTGGTTCCAATAATTGCTCTTGCATTCATCATTCATTACTACTTCAAGAATTTGGACCATCTATGCACACAGGAGCAGTGATATTTCAGATGGAATCACAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	24039	30460	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00695	E2.4.1.13	EC:2.4.1.13	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005985 sucrose metabolic process

molecular_function GO:0016157 sucrose synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001132.1	PF00862.14	Sucrose_synth	11	533	2.10E-199
Glyur000003s00001132.1	PF13524.1	Glyco_trans_1_2	640	729	3.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.055
SRR1783600	control	2.029
SRR1783602	moderate drought stress	2.174
SRR1811619	moderate drought stress	2.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.696
DRR006520	Root Summer glycyrrhizin high producing strain	5.797
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.073
DRR006523	Root Summer glycyrrhizin low producing strain	7.884
DRR006524	Root Summer glycyrrhizin low producing strain	7.975
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.920
SRR2868004	Drought Stress(Tissue:root)	13.655
SRR2967015	Control (Tissue:root)	13.223

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.498
SRR9715740	Leave	0.857
SRR9715741	Leave	2.357
SRR9715739	Root	0.304
SRR9715742	Root	4.613
SRR9715743	Root	3.738

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.224
SRR8400027	Control-Root	4.299