Gene detail information of Glyur000003s00001140.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18330.1 | 4.00E-41 | Homeodomain-like superfamily protein |
| NR | XP_003548314.1 | 0 | PREDICTED: protein CCA1 [Glycine max] |
| Swissprot | tr|B3H5A8|RVE7_ARATH | 8.00E-55 | Protein REVEILLE 7 |
| trEMBL | tr|I1MQL7|I1MQL7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G34340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 90506 | 94536 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001140.1 | PF00249.26 | Myb_DNA-binding | 51 | 95 | 2.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.237 |
| SRR1783600 | control | 13.326 |
| SRR1783602 | moderate drought stress | 27.798 |
| SRR1811619 | moderate drought stress | 27.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 82.646 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 80.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.751 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.485 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.954 |
| SRR2868004 | Drought Stress(Tissue:root) | 90.004 |
| SRR2967015 | Control (Tissue:root) | 41.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 46.632 |
| SRR9715740 | Leave | 68.920 |
| SRR9715741 | Leave | 62.213 |
| SRR9715739 | Root | 6.856 |
| SRR9715742 | Root | 25.692 |
| SRR9715743 | Root | 21.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.792 |
| SRR8749028 | MeJA induced 9h | 62.524 |
| SRR8749029 | MeJA induced 9h | 52.249 |
| SRR8749030 | Uninduced | 21.555 |
| SRR8749031 | Uninduced | 51.432 |
| SRR8749032 | Uninduced | 43.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 170.751 |
| SRR8400027 | Control-Root | 116.930 |